Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g0925 | ATGTTTGCTACTACTGGCATTCTCTTCTTCATCTGGTTTTTGAGCTCCACTCTGCCTTCTCTTACCATGGCAACTTTCAACTTCAATCTCACTCTCCCACATCTTCTTCCAGATCCTGAGACTGTTGCTTATCAAGTTCAGAGGAGTGTGAACGATTCCATGTCCAGAAGACAAATGCTGTCCATTCATTCAAAAGGACAATCCAATTCCTGTCAAACCGGAAACCCTATCGACGATTGTTGGCGCTGCGGCTCCAACTGGCAAGCCAATCGCCAAAAACTCGCCGATTGCGGCATTGGATTCGGCCGAGACGCCATGGGAGGGAAAGGAGGTCAGATCTACGTAGTTACAGATTCCTCCGATTCCGACCCTGTAAACCCTCGCCCTGGAACTCTCCGCTACGCCGTAGTTCAAGATGAACCTCTCTGGATTGTCTTTGCTGCAGATATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGATGGCCGCGGTGCCAATGTCCATATCACCGGCGGCGGCTGCGTCACACTCCAATACATCTCGAATATAATCATCCACAATATCAACATCCACCACTGTATTCCTACCGGCCACACCAACATCCGCTCGTCTCCAACGCACGTCGGATACAGAGGAAAATCCGACGGCGACGGAATCTCGATCTTTAGCTCGCGCAACATCTGGATCGATCATTGCTCGCTCTCGTACTGTACCGATGGCCTAATCGACGCCATTATGGGATCGACCGGAATCACCATCTCGAACAACTACTTCTCGCACCACGACGAGGTGATGCTGCTAGGGCACGACGACGGCTTCACGCCGGACTCGGGGATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGCTTGTTCAGAGGATGCCCCGGTGCCGACGGGGATACATTCATGTTGTTAACAACGACTTCCGATCGTGGGAGATGTACGCCATCGGCGGCAGCGGTAATCCGACGATCAACAGCCAAGGAAATCGGTACATTGCTCCGGTAAATCCCAATGCGAAGGAGGTGACGAAGCGCGTGGACACAAACGCGGGGGATTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATAATGGTAAATGGAGCATTTTTTGTGCCATCCGGCGAAGGACTGAGCAATATGTACGTTAAAGCTTCCAGTTTGCCGCCCAAATCCGCCGCTCTTGTCGACCAGCTCACTCTCAACGCCGGCGTCTTCGGCGGCTCCAGGGAGAGTAGACAGAGCAACACATATCCCGGAGACGAAAGCTCCTCCGGCTCGGGGTCCAGTGGCAGCAGCGATGGCGGTGGTGACTACTTTGGGATGATATTCGGTGGGGGCGGGATTAACAGTGCACCACCACCATCTCTTTCAGTTGTTAACATGATCATTCTAACTCTGTTTACCGTTTTAGTTCTGTACACAAACTCGAACTACCATGCTTTATTATCATTGACATTGTCATTGTAG | 1497 | 51.37 | MFATTGILFFIWFLSSTLPSLTMATFNFNLTLPHLLPDPETVAYQVQRSVNDSMSRRQMLSIHSKGQSNSCQTGNPIDDCWRCGSNWQANRQKLADCGIGFGRDAMGGKGGQIYVVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCVTLQYISNIIIHNINIHHCIPTGHTNIRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGFTPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNDFRSWEMYAIGGSGNPTINSQGNRYIAPVNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSLPPKSAALVDQLTLNAGVFGGSRESRQSNTYPGDESSSGSGSSGSSDGGGDYFGMIFGGGGINSAPPPSLSVVNMIILTLFTVLVLYTNSNYHALLSLTLSL | 498 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 21168709 | 21174500 | - | CcPI632755_08g009250.1 | Cco08g0925 | 185399 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g0925 | 498 | Gene3D | - | 74 | 416 | IPR012334 | - | |
Cco08g0925 | 498 | MobiDBLite | consensus disorder prediction | 416 | 443 | - | - | |
Cco08g0925 | 498 | Pfam | Pectate lyase | 157 | 338 | IPR002022 | - | |
Cco08g0925 | 498 | SUPERFAMILY | Pectin lyase-like | 75 | 414 | IPR011050 | - | |
Cco08g0925 | 498 | PANTHER | PECTATE LYASE 18-RELATED | 33 | 416 | IPR045032 | GO:0030570(InterPro) | |
Cco08g0925 | 498 | PRINTS | Pollen allergen Amb family signature | 97 | 114 | IPR018082 | - | |
Cco08g0925 | 498 | PRINTS | Pollen allergen Amb family signature | 157 | 173 | IPR018082 | - | |
Cco08g0925 | 498 | PRINTS | Pollen allergen Amb family signature | 323 | 342 | IPR018082 | - | |
Cco08g0925 | 498 | PRINTS | Pollen allergen Amb family signature | 394 | 417 | IPR018082 | - | |
Cco08g0925 | 498 | PRINTS | Pollen allergen Amb family signature | 301 | 320 | IPR018082 | - | |
Cco08g0925 | 498 | PRINTS | Pollen allergen Amb family signature | 121 | 146 | IPR018082 | - | |
Cco08g0925 | 498 | PRINTS | Pollen allergen Amb family signature | 221 | 242 | IPR018082 | - | |
Cco08g0925 | 498 | PRINTS | Pollen allergen Amb family signature | 365 | 389 | IPR018082 | - | |
Cco08g0925 | 498 | SMART | amb_all | 149 | 346 | IPR002022 | - | |
Cco08g0925 | 498 | FunFam | Pectate lyase | 74 | 416 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1051 | Cco-Chr4:26054534 | Cco08g0925 | Cco-Chr8:21168709 | 1.50E-40 | dispersed | |
Cco08g0925 | Cco-Chr8:21168709 | Cco09g2155 | Cco-Chr9:35942371 | 1.90E-141 | dispersed | |
Cco04g1144 | Cco-Chr4:26818121 | Cco08g0925 | Cco-Chr8:21168709 | 3.20E-178 | wgd | |
Cco05g2392 | Cco-Chr5:32401227 | Cco08g0925 | Cco-Chr8:21168709 | 1.10E-192 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g0925 | K01728 | - | csv:101207535 | 917.146 |