Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0925 ATGTTTGCTACTACTGGCATTCTCTTCTTCATCTGGTTTTTGAGCTCCACTCTGCCTTCTCTTACCATGGCAACTTTCAACTTCAATCTCACTCTCCCACATCTTCTTCCAGATCCTGAGACTGTTGCTTATCAAGTTCAGAGGAGTGTGAACGATTCCATGTCCAGAAGACAAATGCTGTCCATTCATTCAAAAGGACAATCCAATTCCTGTCAAACCGGAAACCCTATCGACGATTGTTGGCGCTGCGGCTCCAACTGGCAAGCCAATCGCCAAAAACTCGCCGATTGCGGCATTGGATTCGGCCGAGACGCCATGGGAGGGAAAGGAGGTCAGATCTACGTAGTTACAGATTCCTCCGATTCCGACCCTGTAAACCCTCGCCCTGGAACTCTCCGCTACGCCGTAGTTCAAGATGAACCTCTCTGGATTGTCTTTGCTGCAGATATGACAATCAAACTCAAATACGAACTCATGATGAACAGTTACAAAACCCTAGATGGCCGCGGTGCCAATGTCCATATCACCGGCGGCGGCTGCGTCACACTCCAATACATCTCGAATATAATCATCCACAATATCAACATCCACCACTGTATTCCTACCGGCCACACCAACATCCGCTCGTCTCCAACGCACGTCGGATACAGAGGAAAATCCGACGGCGACGGAATCTCGATCTTTAGCTCGCGCAACATCTGGATCGATCATTGCTCGCTCTCGTACTGTACCGATGGCCTAATCGACGCCATTATGGGATCGACCGGAATCACCATCTCGAACAACTACTTCTCGCACCACGACGAGGTGATGCTGCTAGGGCACGACGACGGCTTCACGCCGGACTCGGGGATGCAGGTGACGATTGCGTTTAATTTGTTCGGCGAGAAGCTTGTTCAGAGGATGCCCCGGTGCCGACGGGGATACATTCATGTTGTTAACAACGACTTCCGATCGTGGGAGATGTACGCCATCGGCGGCAGCGGTAATCCGACGATCAACAGCCAAGGAAATCGGTACATTGCTCCGGTAAATCCCAATGCGAAGGAGGTGACGAAGCGCGTGGACACAAACGCGGGGGATTGGTCGGAGTGGAACTGGAGGACGGAGGGGGACATAATGGTAAATGGAGCATTTTTTGTGCCATCCGGCGAAGGACTGAGCAATATGTACGTTAAAGCTTCCAGTTTGCCGCCCAAATCCGCCGCTCTTGTCGACCAGCTCACTCTCAACGCCGGCGTCTTCGGCGGCTCCAGGGAGAGTAGACAGAGCAACACATATCCCGGAGACGAAAGCTCCTCCGGCTCGGGGTCCAGTGGCAGCAGCGATGGCGGTGGTGACTACTTTGGGATGATATTCGGTGGGGGCGGGATTAACAGTGCACCACCACCATCTCTTTCAGTTGTTAACATGATCATTCTAACTCTGTTTACCGTTTTAGTTCTGTACACAAACTCGAACTACCATGCTTTATTATCATTGACATTGTCATTGTAG 1497 51.37 MFATTGILFFIWFLSSTLPSLTMATFNFNLTLPHLLPDPETVAYQVQRSVNDSMSRRQMLSIHSKGQSNSCQTGNPIDDCWRCGSNWQANRQKLADCGIGFGRDAMGGKGGQIYVVTDSSDSDPVNPRPGTLRYAVVQDEPLWIVFAADMTIKLKYELMMNSYKTLDGRGANVHITGGGCVTLQYISNIIIHNINIHHCIPTGHTNIRSSPTHVGYRGKSDGDGISIFSSRNIWIDHCSLSYCTDGLIDAIMGSTGITISNNYFSHHDEVMLLGHDDGFTPDSGMQVTIAFNLFGEKLVQRMPRCRRGYIHVVNNDFRSWEMYAIGGSGNPTINSQGNRYIAPVNPNAKEVTKRVDTNAGDWSEWNWRTEGDIMVNGAFFVPSGEGLSNMYVKASSLPPKSAALVDQLTLNAGVFGGSRESRQSNTYPGDESSSGSGSSGSSDGGGDYFGMIFGGGGINSAPPPSLSVVNMIILTLFTVLVLYTNSNYHALLSLTLSL 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21168709 21174500 - CcPI632755_08g009250.1 Cco08g0925 185399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0925 498 Gene3D - 74 416 IPR012334 -
Cco08g0925 498 MobiDBLite consensus disorder prediction 416 443 - -
Cco08g0925 498 Pfam Pectate lyase 157 338 IPR002022 -
Cco08g0925 498 SUPERFAMILY Pectin lyase-like 75 414 IPR011050 -
Cco08g0925 498 PANTHER PECTATE LYASE 18-RELATED 33 416 IPR045032 GO:0030570(InterPro)
Cco08g0925 498 PRINTS Pollen allergen Amb family signature 97 114 IPR018082 -
Cco08g0925 498 PRINTS Pollen allergen Amb family signature 157 173 IPR018082 -
Cco08g0925 498 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Cco08g0925 498 PRINTS Pollen allergen Amb family signature 394 417 IPR018082 -
Cco08g0925 498 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Cco08g0925 498 PRINTS Pollen allergen Amb family signature 121 146 IPR018082 -
Cco08g0925 498 PRINTS Pollen allergen Amb family signature 221 242 IPR018082 -
Cco08g0925 498 PRINTS Pollen allergen Amb family signature 365 389 IPR018082 -
Cco08g0925 498 SMART amb_all 149 346 IPR002022 -
Cco08g0925 498 FunFam Pectate lyase 74 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1051 Cco-Chr4:26054534 Cco08g0925 Cco-Chr8:21168709 1.50E-40 dispersed
Cco08g0925 Cco-Chr8:21168709 Cco09g2155 Cco-Chr9:35942371 1.90E-141 dispersed
Cco04g1144 Cco-Chr4:26818121 Cco08g0925 Cco-Chr8:21168709 3.20E-178 wgd
Cco05g2392 Cco-Chr5:32401227 Cco08g0925 Cco-Chr8:21168709 1.10E-192 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0925 K01728 - csv:101207535 917.146