Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0945 ATGGCAACGCCGAAGCCTCGCACCACTCGGTCCAGGTCTCACAGGGATATTCCGGATTTGGAGAAGATGGACGCTGCTTACAGTTGGGACGCCCTCGAATGGACCAAGATTGAGCCTGTTCCGCGGTCGGTTTCGCGTGTCAACTTGGATTGCTTGCTTGAAGCGGAACAAGTGATTGCTGAGGGCTATGGTGTTGTTCTTGTGAATACTGATGAGGCGGGTACCTTGTTTGTAACCAATTTTCGTCTTCTATTTCTAAGTGAAGGAACCATGGATGTTATTGCCCTTGGGACTATACCACTGGCTACAATTGATAAATTCAACAAAATAGTTGTGAAGACAAATGCTGTCTCTCGCCAATCCGAAAAGTCTTCACCATCTAGGCGACTTCTTCAGGTCATTGGAAAAGACATGAGAATTATCGTCTTTGGTTTTCGTCCAAGAACAAAACAGAGGCGCAAAGTATATGATGCATTATTGAGGTGTATGAAGCCTGCAAGAATATGGGATCTATATGCATTCCAATCCGGGCCATCCAAGTACTGTAATACAGACCCAAAAGTTCGTTTGCTAAATGAGTATTTTCGGCTTCTTGGAAAGGGTTCCCTACATGCATCTATGAGTATGATTGAAGATGGATCATTTACATTGTCCAATGAATTGTGGAGAATAACTAAAATCAATTCCAATTATACTCTGTGTCAGAGTTATCCATTTGCATTGGTCGTTCCTAAACACATTAGTGATGAAGAGATGTTGCAGGCTTCTACCTTTCGTGCTAGATGCCGTTTGCCTGTTGTTTCGTGGTGCAATCCTGGCACTGGAGCTGTTCTTGCACGTTCATCTCAACCTTTAGTTGGTCTTATGATGAACATGAGAAGTAATACCGATGAAAAGCTTGTTGCTGCCCTTTGCTCGAATCTTGCTGGTGGTCAAGGGTTATCACGTAGGAAGCTTTATATAGCTGATGCAAGGCCTAGAAAAAATGCTTTAGCAAATGGAGCCATGGGAGGTGGCTCAGAGTCTTCATCAAATTATTTTCAATCTGAGATAGTCTTTTTTGGGATTGACAACATACATGCAATGAGGGAAAGTCTTACTCGGCTCAGAGAGTACTTGGATACTCATGGTGAAAAATCATCTGATGGAATGTCATCATTCTTGAGACATGGTGGATGGACTTGGGGTGGGGGTAATCTTAGTAGCATGTCCGCATCTGTATCAACTCTGGGAGATAGTGGCTGGTTAATCCATGTTCAAAGTGTCTTGGCTGGTTCAGCATGGATTGCTGCACGTGTTGCTTTGGAAAATGCAACGGTGCTAGTTCATTGCAGTGACGGCTGGGACAGAACAACACAACTAGTTTCACTTGCTAGCTTACTGCTTGATCCATATTATCGGACGTTTGCTGGATTTCAGGCACTGGTTGAAAAGGATTGGCTAGCATTTGGTCATCCTTTCTCAGATCGGTCTGGCATGCCGACCATATCAGGAAGTGGTAACATTCCATATGAACTATCTAGGCAGTCTTCAACTGGAAGTCTTTCTTCTTCACCTTTGCGTCAGCCATCAGGTGCATTCATATCTCAAGCTTCTAGTCCTCCTCATGCTCAAACATCAAACAACTGTTCTCCCATATTTTTACAGTGGGTTGATTGTGTTTCACAACTTCTGCGCATGTATCCCTTTGCGTTTGAGTTCTCTTCAGCATTCCTTGTGGATTTGTTGGATTGTATGCTTTCCTGTCGCTTTGGGAACTTCTTATGCAATTGTGAGAAGGAGCGGCAGCAATGTGCAGTTTCTGAAGTTTGTGGCTGTCTATGGGCGTATTTAGCTGATTTACGAGCCTCAGAAGGAAGTTCGCATGTGCATCATAACCTCTTTTATGATCCTACCAAACATGAAGGTCCTCTCTTACCTCCTGCAGCATCTCTAGCTCCAACTCTCTGGCCTCAATTCCATCTTCGTTGGGCTTGTCCAAAAGAATCCCAAGCTGGGGAACTTGAAGTCAGATGCAGGAAAATGGCTATAAAATTCTCTGAAATGCAGAAG 2052 43.91 MATPKPRTTRSRSHRDIPDLEKMDAAYSWDALEWTKIEPVPRSVSRVNLDCLLEAEQVIAEGYGVVLVNTDEAGTLFVTNFRLLFLSEGTMDVIALGTIPLATIDKFNKIVVKTNAVSRQSEKSSPSRRLLQVIGKDMRIIVFGFRPRTKQRRKVYDALLRCMKPARIWDLYAFQSGPSKYCNTDPKVRLLNEYFRLLGKGSLHASMSMIEDGSFTLSNELWRITKINSNYTLCQSYPFALVVPKHISDEEMLQASTFRARCRLPVVSWCNPGTGAVLARSSQPLVGLMMNMRSNTDEKLVAALCSNLAGGQGLSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESLTRLREYLDTHGEKSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALENATVLVHCSDGWDRTTQLVSLASLLLDPYYRTFAGFQALVEKDWLAFGHPFSDRSGMPTISGSGNIPYELSRQSSTGSLSSSPLRQPSGAFISQASSPPHAQTSNNCSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDCMLSCRFGNFLCNCEKERQQCAVSEVCGCLWAYLADLRASEGSSHVHHNLFYDPTKHEGPLLPPAASLAPTLWPQFHLRWACPKESQAGELEVRCRKMAIKFSEMQK 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21330895 21343734 - CcPI632755_08g009450.1 Cco08g0945 185419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0945 684 ProSiteProfiles Myotubularin phosphatase domain. 199 654 IPR010569 -
Cco08g0945 684 Gene3D - 63 163 IPR011993 -
Cco08g0945 684 Pfam Myotubularin-like phosphatase domain 216 596 IPR010569 -
Cco08g0945 684 SUPERFAMILY PH domain-like 51 175 - -
Cco08g0945 684 SMART gram2001c 43 111 IPR004182 -
Cco08g0945 684 CDD PTP-MTM-like 262 556 - -
Cco08g0945 684 PANTHER MYOTUBULARIN-RELATED 50 682 IPR030564 GO:0004438(PANTHER)|GO:0106018(PANTHER)
Cco08g0945 684 ProSitePatterns Tyrosine specific protein phosphatases active site. 442 452 IPR016130 GO:0016311(InterPro)
Cco08g0945 684 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 216 658 IPR029021 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0945 K18081 - csv:101204839 1316.6