Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0945 ATGGCAACGCCGAAGCCTCGCACCACTCGGTCCAGGTCTCACAGGGATATTCCGGATTTGGAGAAGATGGACGCTGCTTACAGTTGGGACGCCCTCGAATGGACCAAGATTGAGCCTGTTCCGCGGTCGGTTTCGCGTGTCAACTTGGATTGCTTGCTTGAAGCGGAACAAGTGATTGCTGAGGGCTATGGTGTTGTTCTTGTGAATACTGATGAGGCGGGTACCTTGTTTGTAACCAATTTTCGTCTTCTATTTCTAAGTGAAGGAACCATGGATGTTATTGCCCTTGGGACTATACCACTGGCTACAATTGATAAATTCAACAAAATAGTTGTGAAGACAAATGCTGTCTCTCGCCAATCCGAAAAGTCTTCACCATCTAGGCGACTTCTTCAGGTCATTGGAAAAGACATGAGAATTATCGTCTTTGGTTTTCGTCCAAGAACAAAACAGAGGCGCAAAGTATATGATGCATTATTGAGGTGTATGAAGCCTGCAAGAATATGGGATCTATATGCATTCCAATCCGGGCCATCCAAGTACTGTAATACAGACCCAAAAGTTCGTTTGCTAAATGAGTATTTTCGGCTTCTTGGAAAGGGTTCCCTACATGCATCTATGAGTATGATTGAAGATGGATCATTTACATTGTCCAATGAATTGTGGAGAATAACTAAAATCAATTCCAATTATACTCTGTGTCAGAGTTATCCATTTGCATTGGTCGTTCCTAAACACATTAGTGATGAAGAGATGTTGCAGGCTTCTACCTTTCGTGCTAGATGCCGTTTGCCTGTTGTTTCGTGGTGCAATCCTGGCACTGGAGCTGTTCTTGCACGTTCATCTCAACCTTTAGTTGGTCTTATGATGAACATGAGAAGTAATACCGATGAAAAGCTTGTTGCTGCCCTTTGCTCGAATCTTGCTGGTGGTCAAGGGTTATCACGTAGGAAGCTTTATATAGCTGATGCAAGGCCTAGAAAAAATGCTTTAGCAAATGGAGCCATGGGAGGTGGCTCAGAGTCTTCATCAAATTATTTTCAATCTGAGATAGTCTTTTTTGGGATTGACAACATACATGCAATGAGGGAAAGTCTTACTCGGCTCAGAGAGTACTTGGATACTCATGGTGAAAAATCATCTGATGGAATGTCATCATTCTTGAGACATGGTGGATGGACTTGGGGTGGGGGTAATCTTAGTAGCATGTCCGCATCTGTATCAACTCTGGGAGATAGTGGCTGGTTAATCCATGTTCAAAGTGTCTTGGCTGGTTCAGCATGGATTGCTGCACGTGTTGCTTTGGAAAATGCAACGGTGCTAGTTCATTGCAGTGACGGCTGGGACAGAACAACACAACTAGTTTCACTTGCTAGCTTACTGCTTGATCCATATTATCGGACGTTTGCTGGATTTCAGGCACTGGTTGAAAAGGATTGGCTAGCATTTGGTCATCCTTTCTCAGATCGGTCTGGCATGCCGACCATATCAGGAAGTGGTAACATTCCATATGAACTATCTAGGCAGTCTTCAACTGGAAGTCTTTCTTCTTCACCTTTGCGTCAGCCATCAGGTGCATTCATATCTCAAGCTTCTAGTCCTCCTCATGCTCAAACATCAAACAACTGTTCTCCCATATTTTTACAGTGGGTTGATTGTGTTTCACAACTTCTGCGCATGTATCCCTTTGCGTTTGAGTTCTCTTCAGCATTCCTTGTGGATTTGTTGGATTGTATGCTTTCCTGTCGCTTTGGGAACTTCTTATGCAATTGTGAGAAGGAGCGGCAGCAATGTGCAGTTTCTGAAGTTTGTGGCTGTCTATGGGCGTATTTAGCTGATTTACGAGCCTCAGAAGGAAGTTCGCATGTGCATCATAACCTCTTTTATGATCCTACCAAACATGAAGGTCCTCTCTTACCTCCTGCAGCATCTCTAGCTCCAACTCTCTGGCCTCAATTCCATCTTCGTTGGGCTTGTCCAAAAGAATCCCAAGCTGGGGAACTTGAAGTCAGATGCAGGAAAATGGCTATAAAATTCTCTGAAATGCAGAAG 2052 43.91 MATPKPRTTRSRSHRDIPDLEKMDAAYSWDALEWTKIEPVPRSVSRVNLDCLLEAEQVIAEGYGVVLVNTDEAGTLFVTNFRLLFLSEGTMDVIALGTIPLATIDKFNKIVVKTNAVSRQSEKSSPSRRLLQVIGKDMRIIVFGFRPRTKQRRKVYDALLRCMKPARIWDLYAFQSGPSKYCNTDPKVRLLNEYFRLLGKGSLHASMSMIEDGSFTLSNELWRITKINSNYTLCQSYPFALVVPKHISDEEMLQASTFRARCRLPVVSWCNPGTGAVLARSSQPLVGLMMNMRSNTDEKLVAALCSNLAGGQGLSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESLTRLREYLDTHGEKSSDGMSSFLRHGGWTWGGGNLSSMSASVSTLGDSGWLIHVQSVLAGSAWIAARVALENATVLVHCSDGWDRTTQLVSLASLLLDPYYRTFAGFQALVEKDWLAFGHPFSDRSGMPTISGSGNIPYELSRQSSTGSLSSSPLRQPSGAFISQASSPPHAQTSNNCSPIFLQWVDCVSQLLRMYPFAFEFSSAFLVDLLDCMLSCRFGNFLCNCEKERQQCAVSEVCGCLWAYLADLRASEGSSHVHHNLFYDPTKHEGPLLPPAASLAPTLWPQFHLRWACPKESQAGELEVRCRKMAIKFSEMQK 684
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21330895 21343734 - CcPI632755_08g009450.1 Cco08g0945 185419

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0945 684 ProSiteProfiles Myotubularin phosphatase domain. 199 654 IPR010569 -
Cco08g0945 684 Gene3D - 63 163 IPR011993 -
Cco08g0945 684 Pfam Myotubularin-like phosphatase domain 216 596 IPR010569 -
Cco08g0945 684 SUPERFAMILY PH domain-like 51 175 - -
Cco08g0945 684 SMART gram2001c 43 111 IPR004182 -
Cco08g0945 684 CDD PTP-MTM-like 262 556 - -
Cco08g0945 684 PANTHER MYOTUBULARIN-RELATED 50 682 IPR030564 GO:0004438(PANTHER)|GO:0106018(PANTHER)
Cco08g0945 684 ProSitePatterns Tyrosine specific protein phosphatases active site. 442 452 IPR016130 GO:0016311(InterPro)
Cco08g0945 684 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 216 658 IPR029021 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0945 K18081 - - csv:101204839 1316.6
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco04g1461 . 77 650 Protein tyrosine phosphatase (PTP) family AT3G50110 62.0 1.3e-190 663.3
Cco02g0686 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 57.9 1.9e-178 622.9
Cco10g1533 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 1.4e-153 539.7
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.5 2.6e-300 1028.1
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.2 5.7e-287 983.8
Cco06g1422 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 54.7 0.0e+00 1090.9
Cco06g1795 . 25 444 Protein tyrosine phosphatase (PTP) family AT5G58160 64.4 2.2e-141 500.7
Cco09g1035 . 88 392 Protein tyrosine phosphatase (PTP) family AT1G71860 68.0 6.2e-123 437.6
Cco06g2033 . 170 1067 Protein tyrosine phosphatase (PTP) family AT5G23720 65.5 0.0e+00 1099.3
Cco06g0595 . 75 214 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 1.2e-42 169.9
Cco09g2285 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Cco05g2408 . 139 383 Protein tyrosine phosphatase (PTP) family AT3G52180 73.9 3.3e-109 391.7
Cco07g0514 . 10 269 Protein tyrosine phosphatase (PTP) family AT3G10940 66.5 5.7e-98 354.4
Cco10g1406 . 143 582 Protein tyrosine phosphatase (PTP) family AT3G01510 72.3 5.9e-198 687.2
Cco02g1936 . 96 297 Protein tyrosine phosphatase (PTP) family AT2G32960 59.1 1.5e-73 273.1
Cco09g1122 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.0e-73 272.7
Cco03g1073 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 9.3e-55 210.7
Cco10g0247 . 71 403 Protein tyrosine phosphatase (PTP) family AT2G35680 55.5 6.6e-101 364.4
Cco11g0221 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.7e-80 296.6
Cco11g0221 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.7e-45 179.5
Cco10g0247 . 107 282 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 6.0e-43 171.0
Cco02g1936 . 130 298 Protein tyrosine phosphatase (PTP) family AT4G03960 77.5 1.9e-76 282.3
Cco09g1122 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 2.1e-70 262.3
Cco03g1073 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Cco03g1073 . 7 195 Protein tyrosine phosphatase (PTP) family AT3G02800 70.5 4.0e-77 284.6
Cco02g1936 . 121 293 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.6e-57 218.0
Cco07g0302 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.4e-63 239.2
Cco10g1533 . 1 390 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 1.4e-153 539.7
Cco02g0686 . 33 611 Protein tyrosine phosphatase (PTP) family AT3G19420 66.5 2.0e-220 762.3
Cco04g1461 . 75 650 Protein tyrosine phosphatase (PTP) family AT3G19420 60.9 1.2e-198 689.9
Cco04g1461 . 77 650 Protein tyrosine phosphatase (PTP) family AT3G50110 62.0 1.3e-190 663.3
Cco02g0686 . 42 611 Protein tyrosine phosphatase (PTP) family AT3G50110 57.9 1.9e-178 622.9
Cco06g1422 . 1 1258 Protein tyrosine phosphatase (PTP) family AT5G58160 54.7 0.0e+00 1090.9
Cco06g1795 . 25 444 Protein tyrosine phosphatase (PTP) family AT5G58160 64.4 2.2e-141 500.7
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.5 2.6e-300 1028.1
Cco08g0945 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.2 5.7e-287 983.8
Cco02g2353 . 66 248 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 4.0e-69 258.5
Cco10g0185 . 22 318 Protein tyrosine phosphatase (PTP) family AT2G35320 63.0 9.2e-110 393.7
Cco04g0913 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 70.2 3.0e-286 981.1
Cco04g0913 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.5 4.4e-258 887.5
Cco04g0913 . 86 682 Protein tyrosine phosphatase (PTP) family AT5G28210 55.6 4.0e-184 641.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007488 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 3 1 1 35