Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g0999 ATGGGGTCTCAGGCCGGAGGTGATCCAAATGGCAAACAATCACAATTCCAGCCATTGGTTCGTCAAAATTCACTGTATAGTCTCACACTGGATGAGGTTCAAAATCAGTTGGGTGATCTAGGAAAGCCTTTAATCAGCATGAACCTTGATGAGCTTCTTAAAAATGTGTGGACTGCTGAGGCCAACCAAACCGTTGGTAAAGACAATGAGGACAATAATGTCTTGGCCAATCAAACATCCCTACAACGTCAGGCTAGTCTTTCATTGAATGGTGCTCTGAGTAAAAAGACTGTCGATGAGGTGTGGAGAGACATTCAACAAAGCAAAGACAGTGAGGAGAAGAAGTCTCGTGAACGGCAACCTACGTTGGGAGAGATGACATTGGAAGATTTTCTGGTGAAAGCAGGGGTGGTTGCTGAGACATCGTCAAATAAAAAAGGTGCGGGTCCTGTTGTTGAAATTGACGCAAATATCACACCCCAGTTTCAACAAACGCAGTGGATGCCGTACCCTCAACCTCAGTATCAGTCTCAACAAGCAGCAATGATGGGGGTTTACATGTCAGGCCAGCCTATTCCCCAGCCACTGCATGTGGGAGGTGGTGCCGTGATGGATGTTCCATATGTAGACAACCAGTTGGCATTGCCAACTCCTTTGATGGGAGCTTTATCTGATACACAGACATCTGGAAGAAAAAGGGGAGCGCCTGAAGACATGATTGAGAAAACTGTCGAGCGTAGGCAGAAGAGGATGATAAAGAATCGGGAATCTGCCGCTCGTTCACGAGCAAGGAAGCAGGCATATACCAATGAACTGGAGAATAAAGTTTCACGTTTGGAAGAGGAGAATGAAAGGCTCAGGAAACGAAAGGAGCTGGAAAAGATGCTACCGTTGGCTCCCTCACCTGAGCCGAAGTATCAGCTTCGAAGAACTTCGTCAGCGCCGTTCTAA 951 46.79 MGSQAGGDPNGKQSQFQPLVRQNSLYSLTLDEVQNQLGDLGKPLISMNLDELLKNVWTAEANQTVGKDNEDNNVLANQTSLQRQASLSLNGALSKKTVDEVWRDIQQSKDSEEKKSRERQPTLGEMTLEDFLVKAGVVAETSSNKKGAGPVVEIDANITPQFQQTQWMPYPQPQYQSQQAAMMGVYMSGQPIPQPLHVGGGAVMDVPYVDNQLALPTPLMGALSDTQTSGRKRGAPEDMIEKTVERRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLRKRKELEKMLPLAPSPEPKYQLRRTSSAPF 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21828823 21833062 + CcPI632755_08g009990.1 Cco08g0999 185473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g0999 316 MobiDBLite consensus disorder prediction 247 296 - -
Cco08g0999 316 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 244 296 - -
Cco08g0999 316 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 21 314 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Cco08g0999 316 MobiDBLite consensus disorder prediction 247 316 - -
Cco08g0999 316 SUPERFAMILY Leucine zipper domain 246 291 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0999 316 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 249 264 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0999 316 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 244 289 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0999 316 CDD bZIP_plant_BZIP46 246 300 - -
Cco08g0999 316 Pfam bZIP transcription factor 246 293 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g0999 316 Coils Coil 262 296 - -
Cco08g0999 316 Gene3D - 244 297 - -
Cco08g0999 316 SMART brlzneu 242 314 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1477 Cco-Chr3:29370184 Cco08g0999 Cco-Chr8:21828823 1.80E-49 dispersed
Cco08g0999 Cco-Chr8:21828823 Cco08g1784 Cco-Chr8:28974010 6.10E-32 dispersed
Cco08g0999 Cco-Chr8:21828823 Cco10g1890 Cco-Chr10:32477112 5.70E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59777 PF00170 bZIP_1 3.30E-13 CL0018 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g0999 K14432 - csv:101213915 570.852