Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1004 ATGATGAACACCATGGGAATCTTTGAAGATATTGGCTTTTGCCGGAATCTTGAATATTTTTCGGCTCCTCCTGGGGAGCAAGAGACAGCTCAGGAGCATGAAGCTGAGGCAGCTTTGGAGGAAGATTATAGTGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGCGACCGTATGCTTTTGAGGCGACTCAAAGAACAAAGCAAAGAGAAGGAAGGCACTGACAATTCAAAGCAGCGCCAATCCCAGGAGCAGGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGATGGGATCCTGAAGTATATGTTGAAAATGATGGAGGTCTGTAAAGCTCAAGGATTCGTTTATGGGATTATTCCTGAGAAAGGAAAGCCAGTTAGTGGAGCCTCTGATAATCTTCGTGCCTGGTGGAAAGAGAAAGTCAGATTCGACAGAAACGGCCCTGCAGCAATTGCCAAATATCAGGCTGATCATGCGATTCCTGGGAACAATGACGACTGCAATACAGTGGCATCCACTCCTCACACTTTACAAGAGCTCCAGGACACAACCCTTGGATCACTTTTGTCGGCTCTGATGCAGCACTGTGATCCACCCCAGAGGCGTTTTCCGTTGGAGAAAGGAGTTTCCCCGCCGTGGTGGCCCACCGGAAACGAGGAATGGTGGCCTGAACTAGGACTACCTAAGGACCAGGGGCCGCCCCCTTATAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAAGTTAGTGTTCTCACTGCTGTGATTAAGCATATGTCACCCGATATTGCCAAGATTCGCAAGCTTGTTCGTCAGTCTAAGTGTTTGCAAGACAAGATGACTGCAAAGGAGAGTGCTACATGGTTGGCCATTGTAAACCAGGAAGAAGCTTTGGCTAGGAAATTGTTTCCTGATAAATGCCCACCTGTGTCGATTTGTGGGAGCGGATCTCTTTTGATCAGTGATACAAGTGATTACGATGTCGAAGGAGTTGAAGATGAACCAAATGTTGAAGCAGAGGAAAGCAAACCGCATGATCTCAATTTCTTTAATATGGGAGCTCCTGGATCTAGGGAGAGACTCATGATGGCACCTGTGGGAGCACAGATTAAGGAAGAATTCATGGAGAACAATTCAGACTTCAATCAAAAGAGGAAGCAGATGACAGATGAGTCCAATACAATAATGAATCCGAAAATATATACTTGCGAGTATTCTCAATGCCCTTATAACAGTCAGCGCCTTGGGTTTCTTGACAGGACTTCAAGAAACAACCACCAGTTGAATTGCCCAAGCTTTCAAACTAACGATGACAAATCATCATCGCCTGCTCCTCCATCCTTTAACCATCCTAAGCCACCTACTCGGCTGATGAACCCGACCCCACCCTTCAGGGTATCAGGACTTGGGCTTCCAGAAGATGGCCAGAAAATGATTTCTGACCTTCTGAGTTTCTACGATTCTAACCTTCAACAGGACAAACCTTTGAGTTCCGGTAATGTTGACATTAGAGACGATCACAACCAACAGCAACAACTGCCAAAATTCCAGCTCCAAGTCGATGATAACTTGTATTGTCAAGCAGCAATGGTGGGAAATAGTATACCAATTCAGCAGCAGCAGCAGCCTGATTTTTCTTCTACCAAACTTCCATTCGATGAGTACAAGGCGGCAGCATTCGATTCTCCATTCGGCATGTATCCCAACGATAACATCTCTGACTTCAGATTTGGTTCTCCATTTAATTTGGCATCAATTGATTATGCAGCAGTAGACACAGCATTGCCCAAACAAGATACTTCCTTATGGTACCTTTGA 1824 45.89 MMNTMGIFEDIGFCRNLEYFSAPPGEQETAQEHEAEAALEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKEGTDNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGNNDDCNTVASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWPELGLPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEALARKLFPDKCPPVSICGSGSLLISDTSDYDVEGVEDEPNVEAEESKPHDLNFFNMGAPGSRERLMMAPVGAQIKEEFMENNSDFNQKRKQMTDESNTIMNPKIYTCEYSQCPYNSQRLGFLDRTSRNNHQLNCPSFQTNDDKSSSPAPPSFNHPKPPTRLMNPTPPFRVSGLGLPEDGQKMISDLLSFYDSNLQQDKPLSSGNVDIRDDHNQQQQLPKFQLQVDDNLYCQAAMVGNSIPIQQQQQPDFSSTKLPFDEYKAAAFDSPFGMYPNDNISDFRFGSPFNLASIDYAAVDTALPKQDTSLWYL 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21877756 21879579 + CcPI632755_08g010040.1 Cco08g1004 185478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1004 607 Coils Coil 36 70 - -
Cco08g1004 607 MobiDBLite consensus disorder prediction 69 94 - -
Cco08g1004 607 MobiDBLite consensus disorder prediction 24 46 - -
Cco08g1004 607 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 7 605 IPR006957 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro)
Cco08g1004 607 FunFam Ethylene insensitive 3-like 1 171 308 - -
Cco08g1004 607 Pfam Ethylene insensitive 3, DNA-binding domain 51 298 IPR047091 GO:0003700(InterPro)
Cco08g1004 607 Coils Coil 373 393 - -
Cco08g1004 607 Gene3D - 175 308 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cco08g1004 607 FunFam Ethylene insensitive 3-like 1 83 161 - -
Cco08g1004 607 MobiDBLite consensus disorder prediction 448 462 - -
Cco08g1004 607 MobiDBLite consensus disorder prediction 428 447 - -
Cco08g1004 607 Gene3D - 83 163 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cco08g1004 607 SUPERFAMILY DNA-binding domain of EIN3-like 177 301 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Cco08g1004 607 MobiDBLite consensus disorder prediction 428 463 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1385 Cco-Chr3:27653536 Cco08g1004 Cco-Chr8:21877756 4.50E-100 dispersed
Cco03g1460 Cco-Chr3:29193988 Cco08g1004 Cco-Chr8:21877756 2.60E-196 dispersed
Cco07g1034 Cco-Chr7:23717204 Cco08g1004 Cco-Chr8:21877756 4.50E-84 dispersed
Cco07g1037 Cco-Chr7:23765035 Cco08g1004 Cco-Chr8:21877756 4.50E-84 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59778 PF04873 EIN3 3.50E-132 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1004 K14514 - csv:101214396 1114.75