Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1004 | ATGATGAACACCATGGGAATCTTTGAAGATATTGGCTTTTGCCGGAATCTTGAATATTTTTCGGCTCCTCCTGGGGAGCAAGAGACAGCTCAGGAGCATGAAGCTGAGGCAGCTTTGGAGGAAGATTATAGTGATGAAGAGCTGGATGTTGATGAGCTTGAGAGAAGGATGTGGCGCGACCGTATGCTTTTGAGGCGACTCAAAGAACAAAGCAAAGAGAAGGAAGGCACTGACAATTCAAAGCAGCGCCAATCCCAGGAGCAGGCCCGAAGGAAGAAGATGTCTCGGGCTCAAGATGGGATCCTGAAGTATATGTTGAAAATGATGGAGGTCTGTAAAGCTCAAGGATTCGTTTATGGGATTATTCCTGAGAAAGGAAAGCCAGTTAGTGGAGCCTCTGATAATCTTCGTGCCTGGTGGAAAGAGAAAGTCAGATTCGACAGAAACGGCCCTGCAGCAATTGCCAAATATCAGGCTGATCATGCGATTCCTGGGAACAATGACGACTGCAATACAGTGGCATCCACTCCTCACACTTTACAAGAGCTCCAGGACACAACCCTTGGATCACTTTTGTCGGCTCTGATGCAGCACTGTGATCCACCCCAGAGGCGTTTTCCGTTGGAGAAAGGAGTTTCCCCGCCGTGGTGGCCCACCGGAAACGAGGAATGGTGGCCTGAACTAGGACTACCTAAGGACCAGGGGCCGCCCCCTTATAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAAGTTAGTGTTCTCACTGCTGTGATTAAGCATATGTCACCCGATATTGCCAAGATTCGCAAGCTTGTTCGTCAGTCTAAGTGTTTGCAAGACAAGATGACTGCAAAGGAGAGTGCTACATGGTTGGCCATTGTAAACCAGGAAGAAGCTTTGGCTAGGAAATTGTTTCCTGATAAATGCCCACCTGTGTCGATTTGTGGGAGCGGATCTCTTTTGATCAGTGATACAAGTGATTACGATGTCGAAGGAGTTGAAGATGAACCAAATGTTGAAGCAGAGGAAAGCAAACCGCATGATCTCAATTTCTTTAATATGGGAGCTCCTGGATCTAGGGAGAGACTCATGATGGCACCTGTGGGAGCACAGATTAAGGAAGAATTCATGGAGAACAATTCAGACTTCAATCAAAAGAGGAAGCAGATGACAGATGAGTCCAATACAATAATGAATCCGAAAATATATACTTGCGAGTATTCTCAATGCCCTTATAACAGTCAGCGCCTTGGGTTTCTTGACAGGACTTCAAGAAACAACCACCAGTTGAATTGCCCAAGCTTTCAAACTAACGATGACAAATCATCATCGCCTGCTCCTCCATCCTTTAACCATCCTAAGCCACCTACTCGGCTGATGAACCCGACCCCACCCTTCAGGGTATCAGGACTTGGGCTTCCAGAAGATGGCCAGAAAATGATTTCTGACCTTCTGAGTTTCTACGATTCTAACCTTCAACAGGACAAACCTTTGAGTTCCGGTAATGTTGACATTAGAGACGATCACAACCAACAGCAACAACTGCCAAAATTCCAGCTCCAAGTCGATGATAACTTGTATTGTCAAGCAGCAATGGTGGGAAATAGTATACCAATTCAGCAGCAGCAGCAGCCTGATTTTTCTTCTACCAAACTTCCATTCGATGAGTACAAGGCGGCAGCATTCGATTCTCCATTCGGCATGTATCCCAACGATAACATCTCTGACTTCAGATTTGGTTCTCCATTTAATTTGGCATCAATTGATTATGCAGCAGTAGACACAGCATTGCCCAAACAAGATACTTCCTTATGGTACCTTTGA | 1824 | 45.89 | MMNTMGIFEDIGFCRNLEYFSAPPGEQETAQEHEAEAALEEDYSDEELDVDELERRMWRDRMLLRRLKEQSKEKEGTDNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGNNDDCNTVASTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPTGNEEWWPELGLPKDQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIVNQEEALARKLFPDKCPPVSICGSGSLLISDTSDYDVEGVEDEPNVEAEESKPHDLNFFNMGAPGSRERLMMAPVGAQIKEEFMENNSDFNQKRKQMTDESNTIMNPKIYTCEYSQCPYNSQRLGFLDRTSRNNHQLNCPSFQTNDDKSSSPAPPSFNHPKPPTRLMNPTPPFRVSGLGLPEDGQKMISDLLSFYDSNLQQDKPLSSGNVDIRDDHNQQQQLPKFQLQVDDNLYCQAAMVGNSIPIQQQQQPDFSSTKLPFDEYKAAAFDSPFGMYPNDNISDFRFGSPFNLASIDYAAVDTALPKQDTSLWYL | 607 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 21877756 | 21879579 | + | CcPI632755_08g010040.1 | Cco08g1004 | 185478 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1004 | 607 | Coils | Coil | 36 | 70 | - | - | |
Cco08g1004 | 607 | MobiDBLite | consensus disorder prediction | 69 | 94 | - | - | |
Cco08g1004 | 607 | MobiDBLite | consensus disorder prediction | 24 | 46 | - | - | |
Cco08g1004 | 607 | PANTHER | ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN | 7 | 605 | IPR006957 | GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(InterPro) | |
Cco08g1004 | 607 | FunFam | Ethylene insensitive 3-like 1 | 171 | 308 | - | - | |
Cco08g1004 | 607 | Pfam | Ethylene insensitive 3, DNA-binding domain | 51 | 298 | IPR047091 | GO:0003700(InterPro) | |
Cco08g1004 | 607 | Coils | Coil | 373 | 393 | - | - | |
Cco08g1004 | 607 | Gene3D | - | 175 | 308 | IPR023278 | GO:0003700(InterPro)|GO:0005634(InterPro) | |
Cco08g1004 | 607 | FunFam | Ethylene insensitive 3-like 1 | 83 | 161 | - | - | |
Cco08g1004 | 607 | MobiDBLite | consensus disorder prediction | 448 | 462 | - | - | |
Cco08g1004 | 607 | MobiDBLite | consensus disorder prediction | 428 | 447 | - | - | |
Cco08g1004 | 607 | Gene3D | - | 83 | 163 | IPR023278 | GO:0003700(InterPro)|GO:0005634(InterPro) | |
Cco08g1004 | 607 | SUPERFAMILY | DNA-binding domain of EIN3-like | 177 | 301 | IPR023278 | GO:0003700(InterPro)|GO:0005634(InterPro) | |
Cco08g1004 | 607 | MobiDBLite | consensus disorder prediction | 428 | 463 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco03g1385 | Cco-Chr3:27653536 | Cco08g1004 | Cco-Chr8:21877756 | 4.50E-100 | dispersed | |
Cco03g1460 | Cco-Chr3:29193988 | Cco08g1004 | Cco-Chr8:21877756 | 2.60E-196 | dispersed | |
Cco07g1034 | Cco-Chr7:23717204 | Cco08g1004 | Cco-Chr8:21877756 | 4.50E-84 | dispersed | |
Cco07g1037 | Cco-Chr7:23765035 | Cco08g1004 | Cco-Chr8:21877756 | 4.50E-84 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59778 | PF04873 | EIN3 | 3.50E-132 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1004 | K14514 | - | csv:101214396 | 1114.75 |