Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1011 ATGGAGAAGTTCCCTGTTTATTCTCTTCATTCCCTGTTGATGTTTCTATTCATTTTGAGTCTCATCGTTCCAAGTCAGCCTCTTCCGACTGAGACTCTAGCATTGCTTCGTTTCAAAGAGAATCTCAAAGACCCGACTGGTGTTCTTCATTCTTGGATTGATTCTGAATCCCCTTGTGGATTCTCTGGGATTACTTGCGATCAGGTTTCCGGGAAAGTCGTAGAAATTTCCTTGGAAAACAAGTCGCTTTCTGGTGAGATTTCTCCCTCCATTTCTGTTCTGCAAAGTCTCACAACACTATCATTGGCCTCAAACCACATTTCTGGGGAGCTTCCCTACCAATTGATGAACTGTAGCAATCTTAGAGTATTGAATCTCACTGATAATGAAATAGTTAAGAGGATTCCTGATCTTTCTCAGCTGAGGAAGTTGGAGGTTCTAGATCTGTCAATCAACTTCTTTTCTGGCCAATTCCCAAGCTGGGTTGGAAATTTAACTGGATTGGTTTCTCTGGGACTTGGTGAAAATGAGTTTGAGCCTGGTGAGATACCGGAATCTATTGGAGATTTGAAGAACTTAACTTGGCTATATCTGGCAAATGCACAATTGAGAGGGGAAATACCAGAGTCTCTCTTTGAATTAAAGGCATTAGAGACATTGGATCTTTCAAGGAACAAGCTTTCTGGTAAACTCTCCAAGTCAATATCCAAGTTGAATAATCTGAATAAGCTTGAGCTTTTTGTTAACAAATTGACTGGAGAAATCCCACCAGAGATTTCAAATCTTACCCTTCTGCAAGAAATTGATATGTCTGCAAATAGTTTGTATGGCCAGTTGCCAGAAGAGGTTGGAAACCTGAGGAATTTGGTGGTTTTTCAATTGTATGAAAACAACTTCTCTGGAAAGCTTCCTGAAGGGTTTGGAAATATGCAAAACCTTATTGCATTTTCAATCTATAGGAACAATTTTTCTGGAGAATTTCCAGTAAACTTCGGCAGATTCGCTCCGCTCAACAGCATTGACATATCAGAGAATCAATTTTCAGGGAACTTTCCCAAGTTCTTGTGTGAGAATAGGAAGTTGCAGTTCTTACTTGCTTTGGAAAATAGATTTTCAGGTGAGCTGCCACTTTCTTTAGCTGACTGCAAATCAATCCAAAGATTCAGAATCAATAATAATCAAATGTCTGGCAGGATTCCAGATGGGGTATGGGCTCTTCCTAATGCAAAAATGATTGATTTTAGTGATAATGAATTCACTGGAACTATATCCCCAAACATTGGTTTATCTACCAGCTTGAGCCAGTTGGTTTTGCCAAACAATAAGTTTTCAGGTAAACTTCCATCAGAGCTTGGCAAGTTGACAAATTTAGAGAGGCTTTACTTGAGTAACAATGAATTCAATGGAGAAATACCTTCTGAAATTGGTTTCCTCAAGCAACTTTCATCGTTACACCTGGAAGTAAATTCTTTGAATGGATCAATCCCATTAGAGATTGGTAATTGTGAAAGACTTGTGGACATAAATTTTGCTCAAAACTCTCTTAGTGGTAGCATTCCATCTTCGTTTGCGTTAATCAGCTCTTTGAACTCGCTGAACCTCTCAAGCAACAAACTTACAGGTATAATCCCAGAATCCTTGGAGAAGATGAAACTAAGTTCGATTGATTTTTCGGGAAATCAGCTGTTCGGGAGAGTTCCATCCAGTCTTCTGGCAATGAGTGGAGACAAAGCATTTTTGGACAACAAAGAACTCTGTGTTGATGAAAACTACAGAGAAAGGATAAATACCAGCCTGGTTACTTGTACTGGAAAGCATAGTCAGAAAGGGGTGCTTAATGATAAACTTGTATTTTTCAGTATCATAGTTTCCATCTTGGTTTGTGTATTAGCAGGGCTAGTGTTGGTAAGTTGTAATTACTTGAAGCTCGGTGAGAATGGCCTAGATACCAGTCAGGAAGGGGACCAACAAGGAATTCCAAAATGGAAAATTGCATCATTCCATCAAGTGGAAATTGATGCAGATGAAATATGCAGTTTTAAAGAAGACAATTTGATAGGGAGTGGAGGAACGGGAAAAGTTTATCGGTTGGATCTGAAGAAAAACGGTGGTACAGTGGCTGTTAAGCAGCTCTGGAAAGGAGATGCAATGAAGGTTTTGGCAGCAGAAATGGAGATTCTGGGAAAGATAAGGCATAGAAACATCTTGAAGCTCTATGCCTGCTTAATGAGAGAAGGATCTAGTTATCTAGTTTTTGAATATATGACCAATGGTAACCTGTGTGAAGCACTTCAGAGACAGATCAAAGGTGGACAGCCTGAACTGAACTGGTATCAGAGGTACAGGATTGCATTGGGAGCAGCCAGGGGAATTGCTTACTTGCACCATGATTGTTCACCACCTATAATTCATAGAGACATAAAGTCAACAAACATACTTCTTGATGAAGATTATGAACCAAAAATTGCTGATTTTGGGGTTGCAAAAGTTGCAGATCAGTTTCAAAGTGCTTCTGAGCACAGCTCTCTTGCTGGCACTCATGGCTATATTGCTCCTGAGCTAGCGTATACTCTGAAAGTTTCCGAAAAAAGTGATGTCTACAGTTATGGTGTGGTGCTATTAGAATTGATTACTGGAAGGAGACCAATAGAGGATGAATATGGAGAAGGAAAAGATATAGTCTACTGGATCTCAACACACCTTGATGACCGTGATAATGTCCTCAAGCTTCTAGATATCAAAGTTGCATCTGAAGCCGTCCAAAATGACATGATTAAAGTCCTGAAGATTGCTGTACTTTGCACAACAAAGCTTCCATCACTTCGCCCTTCAATGAGAGAGGTAGTGAAGATGCTATCGGACGCTGATCCCTACTCTTCTTCAGTGTCCCTGAACAACAGTTCAAATAAAAACATTAAGGATTTTGTTTAG 2931 39.75 MEKFPVYSLHSLLMFLFILSLIVPSQPLPTETLALLRFKENLKDPTGVLHSWIDSESPCGFSGITCDQVSGKVVEISLENKSLSGEISPSISVLQSLTTLSLASNHISGELPYQLMNCSNLRVLNLTDNEIVKRIPDLSQLRKLEVLDLSINFFSGQFPSWVGNLTGLVSLGLGENEFEPGEIPESIGDLKNLTWLYLANAQLRGEIPESLFELKALETLDLSRNKLSGKLSKSISKLNNLNKLELFVNKLTGEIPPEISNLTLLQEIDMSANSLYGQLPEEVGNLRNLVVFQLYENNFSGKLPEGFGNMQNLIAFSIYRNNFSGEFPVNFGRFAPLNSIDISENQFSGNFPKFLCENRKLQFLLALENRFSGELPLSLADCKSIQRFRINNNQMSGRIPDGVWALPNAKMIDFSDNEFTGTISPNIGLSTSLSQLVLPNNKFSGKLPSELGKLTNLERLYLSNNEFNGEIPSEIGFLKQLSSLHLEVNSLNGSIPLEIGNCERLVDINFAQNSLSGSIPSSFALISSLNSLNLSSNKLTGIIPESLEKMKLSSIDFSGNQLFGRVPSSLLAMSGDKAFLDNKELCVDENYRERINTSLVTCTGKHSQKGVLNDKLVFFSIIVSILVCVLAGLVLVSCNYLKLGENGLDTSQEGDQQGIPKWKIASFHQVEIDADEICSFKEDNLIGSGGTGKVYRLDLKKNGGTVAVKQLWKGDAMKVLAAEMEILGKIRHRNILKLYACLMREGSSYLVFEYMTNGNLCEALQRQIKGGQPELNWYQRYRIALGAARGIAYLHHDCSPPIIHRDIKSTNILLDEDYEPKIADFGVAKVADQFQSASEHSSLAGTHGYIAPELAYTLKVSEKSDVYSYGVVLLELITGRRPIEDEYGEGKDIVYWISTHLDDRDNVLKLLDIKVASEAVQNDMIKVLKIAVLCTTKLPSLRPSMREVVKMLSDADPYSSSVSLNNSSNKNIKDFV 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21915708 21918920 - CcPI632755_08g010110.1 Cco08g1011 185485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1011 976 FunFam leucine-rich repeat receptor-like protein kinase TDR 755 963 - -
Cco08g1011 976 FunFam Leucine-rich receptor-like protein kinase family protein 670 754 - -
Cco08g1011 976 Gene3D Transferase(Phosphotransferase) domain 1 755 973 - -
Cco08g1011 976 SMART LRR_typ_2 454 478 IPR003591 -
Cco08g1011 976 SMART LRR_typ_2 262 286 IPR003591 -
Cco08g1011 976 SMART LRR_typ_2 190 214 IPR003591 -
Cco08g1011 976 SMART LRR_typ_2 526 549 IPR003591 -
Cco08g1011 976 SMART LRR_typ_2 141 165 IPR003591 -
Cco08g1011 976 SMART LRR_typ_2 94 118 IPR003591 -
Cco08g1011 976 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524(InterPro)
Cco08g1011 976 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 17 954 IPR050647 -
Cco08g1011 976 PRINTS Leucine-rich repeat signature 217 230 - -
Cco08g1011 976 PRINTS Leucine-rich repeat signature 526 539 - -
Cco08g1011 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g1011 976 Gene3D Ribonuclease Inhibitor 472 593 IPR032675 -
Cco08g1011 976 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515(InterPro)
Cco08g1011 976 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Cco08g1011 976 ProSiteProfiles Protein kinase domain profile. 680 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1011 976 Gene3D Ribonuclease Inhibitor 28 180 IPR032675 -
Cco08g1011 976 SUPERFAMILY Protein kinase-like (PK-like) 677 952 IPR011009 -
Cco08g1011 976 ProSiteProfiles Leucine-rich repeat profile. 528 549 IPR001611 GO:0005515(InterPro)
Cco08g1011 976 Gene3D Ribonuclease Inhibitor 368 471 IPR032675 -
Cco08g1011 976 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515(InterPro)
Cco08g1011 976 Pfam Leucine Rich Repeat 240 262 IPR001611 GO:0005515(InterPro)
Cco08g1011 976 Pfam Leucine Rich Repeat 288 310 IPR001611 GO:0005515(InterPro)
Cco08g1011 976 Pfam Leucine Rich Repeat 456 478 IPR001611 GO:0005515(InterPro)
Cco08g1011 976 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515(InterPro)
Cco08g1011 976 Pfam Leucine Rich Repeat 528 550 IPR001611 GO:0005515(InterPro)
Cco08g1011 976 Pfam Leucine Rich Repeat 217 238 IPR001611 GO:0005515(InterPro)
Cco08g1011 976 Gene3D Ribonuclease Inhibitor 181 359 IPR032675 -
Cco08g1011 976 FunFam Leucine-rich repeat receptor protein kinase EMS1 207 291 - -
Cco08g1011 976 FunFam Probable inactive receptor kinase RLK902 28 182 - -
Cco08g1011 976 FunFam Receptor-like protein kinase HSL1 292 594 - -
Cco08g1011 976 SMART serkin_6 680 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1011 976 SUPERFAMILY L domain-like 55 280 - -
Cco08g1011 976 Gene3D Phosphorylase Kinase; domain 1 650 754 - -
Cco08g1011 976 Pfam Protein kinase domain 681 950 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1011 976 SUPERFAMILY RNI-like 249 569 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0170 Cco-Chr6:1751307 Cco08g1011 Cco-Chr8:21915708 9.80E-40 dispersed
Cco08g1011 Cco-Chr8:21915708 Cco11g1543 Cco-Chr11:28333246 2.10E-75 dispersed
Cco08g1011 Cco-Chr8:21915708 Cco08g1352 Cco-Chr8:25436011 2.70E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87032 PF00069 Pkinase 2.00E-48 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1011 - - - 0.0