Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1029 | ATGGACTTTACAGTTCTAAATTCAGAGTTGTGCTCTCTCAAATGTGATTCCATGGCCGTCAAGGGCATCAAGAGACGGCGGAGAACTGCTTCTTCTTCCCCCACAGTTGGTGGTGGAGATGCCCAACCACACAAGTCAATGGCAGATCATTCCACTGCCACAAAAAGAAGCTCTAGGTTTCGTGGAGTTAGCAGACATCGATGGACGGGACGATTTGAAGCTCATTTATGGGACAAAGGGTCTTGGAATCCAACACAAAGGAAGAAGGGAAAACAAGGAGCTTATGACGAAGAAGAATCAGCTGCTAGGGCATATGACTTAGCTGCACTCAAGTATTGGGGAACATCAACTTTCACTAACTTTTCGATATCTGATTATGAGGATGAGATTGAGATGATGAAAAATGTGACAAAGGAGGAATACTTGGCCTCTTTAAGAAGGAGAAGCAGTGGGTTCTCAAGAGGTGTATCAAAATATCGGGGAGTCGCCAGACACCATCACAATGGGAGGTGGGAAGCAAGAATTGGAAGAGTTTTTGGCAACAAATATTTGTACCTTGGAACTTACAGTACACAAGAGGAGGCAGCAAGGGCATACGACATAGCAGCTATAGAATACAGAGGCATAAACGCAGTGACCAACTTCGATTTGAGCACTTACATAAGATGGCTTAAACCCCAACAACACCATCCAAATCCAAAACAATCTTCTCCACCAATTTCCTCCTTCTTTCCAATTGATACACCTCCTAATAATAATACCCTACAATCTTCTAATGATAATCTTCACTTTCCTATCTTCCAACCCCTCAATAATGATGATGCTAATAATAATGTTATTATTCCCACTGCCCCACAAACTTCCCCTCGCACAGCCCTTGGCCTCCTCCTCAAATCCTCCCTCTTCAAACACCTTGTGGAGAAGAACATTGTGAATAATGTCAATGAAGAGGAGTACTACTCCAATGATGAAGAAGCTAGAGGCCTACTCTCCTTTGCTCATTCTAATAATCCCTACTTGGATTTGCACTATCCATGTCAAGGAACCACCAACTTATCACTCTCCACCCCTCTCCATTACTCCACTTTACCAATGTCGCAAATTTAG | 1107 | 43.18 | MDFTVLNSELCSLKCDSMAVKGIKRRRRTASSSPTVGGGDAQPHKSMADHSTATKRSSRFRGVSRHRWTGRFEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFSISDYEDEIEMMKNVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLKPQQHHPNPKQSSPPISSFFPIDTPPNNNTLQSSNDNLHFPIFQPLNNDDANNNVIIPTAPQTSPRTALGLLLKSSLFKHLVEKNIVNNVNEEEYYSNDEEARGLLSFAHSNNPYLDLHYPCQGTTNLSLSTPLHYSTLPMSQI | 368 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 22126054 | 22139460 | - | CcPI632755_08g010290.1 | Cco08g1029 | 185503 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1029 | 368 | CDD | AP2 | 58 | 124 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1029 | 368 | ProSiteProfiles | AP2/ERF domain profile. | 158 | 216 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1029 | 368 | ProSiteProfiles | AP2/ERF domain profile. | 59 | 122 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1029 | 368 | FunFam | AP2-like ethylene-responsive transcription factor | 157 | 218 | - | - | |
Cco08g1029 | 368 | SUPERFAMILY | DNA-binding domain | 157 | 218 | IPR016177 | GO:0003677(InterPro) | |
Cco08g1029 | 368 | PRINTS | Ethylene responsive element binding protein signature | 60 | 71 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1029 | 368 | PRINTS | Ethylene responsive element binding protein signature | 198 | 218 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1029 | 368 | Pfam | AP2 domain | 157 | 208 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1029 | 368 | Gene3D | AP2/ERF domain | 58 | 124 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1029 | 368 | Gene3D | AP2/ERF domain | 157 | 218 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1029 | 368 | MobiDBLite | consensus disorder prediction | 227 | 252 | - | - | |
Cco08g1029 | 368 | MobiDBLite | consensus disorder prediction | 229 | 252 | - | - | |
Cco08g1029 | 368 | SUPERFAMILY | DNA-binding domain | 58 | 123 | IPR016177 | GO:0003677(InterPro) | |
Cco08g1029 | 368 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 47 | 248 | - | - | |
Cco08g1029 | 368 | SMART | rav1_2 | 158 | 222 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1029 | 368 | SMART | rav1_2 | 59 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1029 | 368 | MobiDBLite | consensus disorder prediction | 23 | 61 | - | - | |
Cco08g1029 | 368 | CDD | AP2 | 157 | 218 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g1029 | Cco-Chr8:22126054 | Cco09g0332 | Cco-Chr9:2933280 | 7.20E-69 | dispersed | |
Cco06g1457 | Cco-Chr6:25035595 | Cco08g1029 | Cco-Chr8:22126054 | 5.10E-80 | transposed | |
Cco10g1476 | Cco-Chr10:27846823 | Cco08g1029 | Cco-Chr8:22126054 | 2.40E-94 | transposed | |
Cco05g2472 | Cco-Chr5:33153523 | Cco08g1029 | Cco-Chr8:22126054 | 3.00E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59781 | PF00847 | AP2 | 3.40E-09 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1029 | - | - | - | 0.0 |