Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1029 ATGGACTTTACAGTTCTAAATTCAGAGTTGTGCTCTCTCAAATGTGATTCCATGGCCGTCAAGGGCATCAAGAGACGGCGGAGAACTGCTTCTTCTTCCCCCACAGTTGGTGGTGGAGATGCCCAACCACACAAGTCAATGGCAGATCATTCCACTGCCACAAAAAGAAGCTCTAGGTTTCGTGGAGTTAGCAGACATCGATGGACGGGACGATTTGAAGCTCATTTATGGGACAAAGGGTCTTGGAATCCAACACAAAGGAAGAAGGGAAAACAAGGAGCTTATGACGAAGAAGAATCAGCTGCTAGGGCATATGACTTAGCTGCACTCAAGTATTGGGGAACATCAACTTTCACTAACTTTTCGATATCTGATTATGAGGATGAGATTGAGATGATGAAAAATGTGACAAAGGAGGAATACTTGGCCTCTTTAAGAAGGAGAAGCAGTGGGTTCTCAAGAGGTGTATCAAAATATCGGGGAGTCGCCAGACACCATCACAATGGGAGGTGGGAAGCAAGAATTGGAAGAGTTTTTGGCAACAAATATTTGTACCTTGGAACTTACAGTACACAAGAGGAGGCAGCAAGGGCATACGACATAGCAGCTATAGAATACAGAGGCATAAACGCAGTGACCAACTTCGATTTGAGCACTTACATAAGATGGCTTAAACCCCAACAACACCATCCAAATCCAAAACAATCTTCTCCACCAATTTCCTCCTTCTTTCCAATTGATACACCTCCTAATAATAATACCCTACAATCTTCTAATGATAATCTTCACTTTCCTATCTTCCAACCCCTCAATAATGATGATGCTAATAATAATGTTATTATTCCCACTGCCCCACAAACTTCCCCTCGCACAGCCCTTGGCCTCCTCCTCAAATCCTCCCTCTTCAAACACCTTGTGGAGAAGAACATTGTGAATAATGTCAATGAAGAGGAGTACTACTCCAATGATGAAGAAGCTAGAGGCCTACTCTCCTTTGCTCATTCTAATAATCCCTACTTGGATTTGCACTATCCATGTCAAGGAACCACCAACTTATCACTCTCCACCCCTCTCCATTACTCCACTTTACCAATGTCGCAAATTTAG 1107 43.18 MDFTVLNSELCSLKCDSMAVKGIKRRRRTASSSPTVGGGDAQPHKSMADHSTATKRSSRFRGVSRHRWTGRFEAHLWDKGSWNPTQRKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFSISDYEDEIEMMKNVTKEEYLASLRRRSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSTYIRWLKPQQHHPNPKQSSPPISSFFPIDTPPNNNTLQSSNDNLHFPIFQPLNNDDANNNVIIPTAPQTSPRTALGLLLKSSLFKHLVEKNIVNNVNEEEYYSNDEEARGLLSFAHSNNPYLDLHYPCQGTTNLSLSTPLHYSTLPMSQI 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22126054 22139460 - CcPI632755_08g010290.1 Cco08g1029 185503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1029 368 CDD AP2 58 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1029 368 ProSiteProfiles AP2/ERF domain profile. 158 216 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1029 368 ProSiteProfiles AP2/ERF domain profile. 59 122 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1029 368 FunFam AP2-like ethylene-responsive transcription factor 157 218 - -
Cco08g1029 368 SUPERFAMILY DNA-binding domain 157 218 IPR016177 GO:0003677(InterPro)
Cco08g1029 368 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1029 368 PRINTS Ethylene responsive element binding protein signature 198 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1029 368 Pfam AP2 domain 157 208 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1029 368 Gene3D AP2/ERF domain 58 124 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1029 368 Gene3D AP2/ERF domain 157 218 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1029 368 MobiDBLite consensus disorder prediction 227 252 - -
Cco08g1029 368 MobiDBLite consensus disorder prediction 229 252 - -
Cco08g1029 368 SUPERFAMILY DNA-binding domain 58 123 IPR016177 GO:0003677(InterPro)
Cco08g1029 368 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 47 248 - -
Cco08g1029 368 SMART rav1_2 158 222 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1029 368 SMART rav1_2 59 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1029 368 MobiDBLite consensus disorder prediction 23 61 - -
Cco08g1029 368 CDD AP2 157 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1029 Cco-Chr8:22126054 Cco09g0332 Cco-Chr9:2933280 7.20E-69 dispersed
Cco06g1457 Cco-Chr6:25035595 Cco08g1029 Cco-Chr8:22126054 5.10E-80 transposed
Cco10g1476 Cco-Chr10:27846823 Cco08g1029 Cco-Chr8:22126054 2.40E-94 transposed
Cco05g2472 Cco-Chr5:33153523 Cco08g1029 Cco-Chr8:22126054 3.00E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59781 PF00847 AP2 3.40E-09 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1029 - - - 0.0