Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1034 ATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTAGTTCCGTCATTCAACTCTGAACTCTCGCCGGAAACTGTTTCGAACTGCAGACTGGGTAGCCTCAACTCCTTTCGCCCTCTCCTCACTCTCACTACTACACGCAAACCTTCTCCGAAATGCCAATACTCCTGGAACACGCAGCAGCAGCAGCAGCAGCAGTCGGCCTTCGAACCGGGCTCTCAAACTGATTCATTTGCCTCACAAACTCGCGCCGGAGTAGCTGCTGCTGCATTGCCACCAAGGTTTTTTGTTGGTCATTCGATATACAAAGGAAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATTCAGGGGCTTTCAAAATATCCAGGGAAGGATTTGTGTTGCTTCAATTTGCTCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTTGTTGCCCTTGGCCCACGAGAGTCTTGCGAATTCTTTCACGATCCCTATAAGGGAAAAAGTGATGAAGGGAAAGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCAGATGGTTCTGGCCATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTGGATGAGAGCATTTATATTCCTATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATCACGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCCAATCCCAGATATGGAGGTGACTTTGAATGGAACAGATAG 831 46.81 MLRLQWLSSSLVPSFNSELSPETVSNCRLGSLNSFRPLLTLTTTRKPSPKCQYSWNTQQQQQQQSAFEPGSQTDSFASQTRAGVAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTITRPEDSSRVNNANPRYGGDFEWNR 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22163398 22166999 + CcPI632755_08g010340.1 Cco08g1034 185508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1034 276 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 42 276 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cco08g1034 276 Gene3D Transcriptional Coactivator Pc4; Chain A 84 257 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco08g1034 276 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 84 260 - -
Cco08g1034 276 Pfam Whirly transcription factor 99 233 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Cco08g1034 276 SUPERFAMILY ssDNA-binding transcriptional regulator domain 91 276 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1034 K26559 - - csv:101203474 479.559
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0241 Cco-Chr8:4179239 Cco08g1034 Cco-Chr8:22163398 9.80E-41 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1034 . 72 276 Whirly Transcription Factor Family AT1G14410 74.8 9.7e-92 333.6
Cco08g0241 . 144 303 Whirly Transcription Factor Family AT1G71260 67.5 1.2e-59 226.9
Cco08g1034 . 67 276 Whirly Transcription Factor Family AT2G02740 73.9 2.7e-89 325.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59782 PF08536 Whirly 9.30E-61 CL0609 Cco TF