Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1034 | ATGCTGCGTCTTCAATGGCTTTCTTCTTCCTTAGTTCCGTCATTCAACTCTGAACTCTCGCCGGAAACTGTTTCGAACTGCAGACTGGGTAGCCTCAACTCCTTTCGCCCTCTCCTCACTCTCACTACTACACGCAAACCTTCTCCGAAATGCCAATACTCCTGGAACACGCAGCAGCAGCAGCAGCAGCAGTCGGCCTTCGAACCGGGCTCTCAAACTGATTCATTTGCCTCACAAACTCGCGCCGGAGTAGCTGCTGCTGCATTGCCACCAAGGTTTTTTGTTGGTCATTCGATATACAAAGGAAAGGCTGCTCTTACAGTTGAGCCTAGGCCACCAGAGTTTACACCTCTAGATTCAGGGGCTTTCAAAATATCCAGGGAAGGATTTGTGTTGCTTCAATTTGCTCCTGCAGCTGGTGTTCGTCAATATGATTGGAGCAGAAAACAGGTATTCTCATTATCAGTGACAGAATTGGGAAGTCTTGTTGCCCTTGGCCCACGAGAGTCTTGCGAATTCTTTCACGATCCCTATAAGGGAAAAAGTGATGAAGGGAAAGTCAGAAAGATACTAAAAGTGGAGCCTCTTCCAGATGGTTCTGGCCATTTCTTCAATCTCAGCGTTCAGAACAAGCTAATCAACGTGGATGAGAGCATTTATATTCCTATCACCAAAGCAGAGTATACTGTACTTGTTGAGGCTTTCAAGTTTATCTTGCCGCACCTCATGGGTTGGCATACGATTGCAAACACCATCACGAGGCCTGAAGATAGCAGCCGAGTAAATAACGCCAATCCCAGATATGGAGGTGACTTTGAATGGAACAGATAG | 831 | 46.81 | MLRLQWLSSSLVPSFNSELSPETVSNCRLGSLNSFRPLLTLTTTRKPSPKCQYSWNTQQQQQQQSAFEPGSQTDSFASQTRAGVAAAALPPRFFVGHSIYKGKAALTVEPRPPEFTPLDSGAFKISREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLVALGPRESCEFFHDPYKGKSDEGKVRKILKVEPLPDGSGHFFNLSVQNKLINVDESIYIPITKAEYTVLVEAFKFILPHLMGWHTIANTITRPEDSSRVNNANPRYGGDFEWNR | 276 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 22163398 | 22166999 | + | CcPI632755_08g010340.1 | Cco08g1034 | 185508 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1034 | 276 | PANTHER | SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL | 42 | 276 | IPR013742 | GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro) | |
Cco08g1034 | 276 | Gene3D | Transcriptional Coactivator Pc4; Chain A | 84 | 257 | IPR009044 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cco08g1034 | 276 | FunFam | Single-stranded DNA-binding protein WHY2, mitochondrial | 84 | 260 | - | - | |
Cco08g1034 | 276 | Pfam | Whirly transcription factor | 99 | 233 | IPR013742 | GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro) | |
Cco08g1034 | 276 | SUPERFAMILY | ssDNA-binding transcriptional regulator domain | 91 | 276 | IPR009044 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g0241 | Cco-Chr8:4179239 | Cco08g1034 | Cco-Chr8:22163398 | 9.80E-41 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59782 | PF08536 | Whirly | 9.30E-61 | CL0609 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1034 | K26559 | - | csv:101203474 | 479.559 |