Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1046 ATGGTTGGCTTTAGAACCTTGTTCGTGTGTTCACTGTTGTTTTTTGTGGTAGCAAATGCGGATGTGGATGAGGATGAATACTGGCGGAATCGTGCCGCCGAAGCTCAAAAAATAGCCCAAGATGCCTACAATCCTGACCCCGAACTTGTTACCGATAACTTGAACGCCGCCGTCAGTCGGGCGATGTTGGGTCGCAACAGTACGAGAAGGAGTCTGAAGAGGAAATATAAAGGACCATGTTTGGCGACGAACCCCATTGACAGATGTTGGAGATGCGACCCAAATTGGGCCACCAACCGAAAGAAGCTAGCGGAATGTCCGTTGGGGTTCGGCCACAAAACCATTGGGGGAAAGAGAGGACCCATCTATGTGGTGACGGATGCATCGGACGACGACTTGATTAATCCTAAACCTGGAACCCTGCGCTATGGCGTGATCCAAAAAGGTCCACTTTGGATCATCTTCGGGCGAAGCATGATCATCAGGCTGAGTCAAGAGCTAATGATCTCGAGCGACAAGACCATCGACGCTCGTGGCGCCAATGTCCACATTGCCTACGGCGCTGGCCTCACCATTCAATTTGTCAACAATGTGATCATCCATAACCTTCACATCCACGACATTATCTCCAAATCAGGTGGAATGATTAGAGATTCTGTGGACCATTATGGGTTTAGAACACAAAGCGATGGCGATGGCATCTCCATATTTGGGTCTACGAATGTTTGGATCGACCATATTTCCATGTCCAATTGTCAAGATGGTCTTATCGACGCCATCATGGGTTCCACTGCAATCACCATCTCCAATTGTCATTTCACTCACCACAATGAGGTGATGTTGTTCGGAGCCAGCGATAGCTACGCAGGTGACTCGGTTATGCAAATAACGATTGCATTCAACCACTTTGGGAGGGGATTGGTTCAAAGAATGCCAAGGTGCAGATGGGGTTTCTTCCATGTTGTTAACAATGATTACACCCACTGGCTTATGTATGCAATTGGTGGTAGCCAACACCCTACCATTGTTAGCCAAGGCAATCGTTTCATTGCTCCTCCAAACCCTAATGCCAAACAGGTAACAAAGAGAGAATATGCAATGGAGGCGGAGTGGAAGAAATGGTCATGGAGATCTGAAGGAGATTTGCTGATGAATGGAGCAGTGTTTATTCCATCAGGTGACCAAACCAAAGGGAAGAAGAAGGGTTTATCAAGATACGATATGATTTCCTTCAAGCCAGGAACATACGTCAGGAGACTTGCACGCTTCTCTGGCACACTTGCATGCGCCCCACGCAAACCATGCTAG 1308 47.78 MVGFRTLFVCSLLFFVVANADVDEDEYWRNRAAEAQKIAQDAYNPDPELVTDNLNAAVSRAMLGRNSTRRSLKRKYKGPCLATNPIDRCWRCDPNWATNRKKLAECPLGFGHKTIGGKRGPIYVVTDASDDDLINPKPGTLRYGVIQKGPLWIIFGRSMIIRLSQELMISSDKTIDARGANVHIAYGAGLTIQFVNNVIIHNLHIHDIISKSGGMIRDSVDHYGFRTQSDGDGISIFGSTNVWIDHISMSNCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYAGDSVMQITIAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKQVTKREYAMEAEWKKWSWRSEGDLLMNGAVFIPSGDQTKGKKKGLSRYDMISFKPGTYVRRLARFSGTLACAPRKPC 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22251988 22253540 + CcPI632755_08g010460.1 Cco08g1046 185520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1046 435 Gene3D - 83 428 IPR012334 -
Cco08g1046 435 PRINTS Pollen allergen Amb family signature 230 251 IPR018082 -
Cco08g1046 435 PRINTS Pollen allergen Amb family signature 332 351 IPR018082 -
Cco08g1046 435 PRINTS Pollen allergen Amb family signature 106 123 IPR018082 -
Cco08g1046 435 PRINTS Pollen allergen Amb family signature 166 182 IPR018082 -
Cco08g1046 435 PRINTS Pollen allergen Amb family signature 130 155 IPR018082 -
Cco08g1046 435 PRINTS Pollen allergen Amb family signature 374 398 IPR018082 -
Cco08g1046 435 PRINTS Pollen allergen Amb family signature 406 429 IPR018082 -
Cco08g1046 435 PRINTS Pollen allergen Amb family signature 310 329 IPR018082 -
Cco08g1046 435 SMART amb_all 158 355 IPR002022 -
Cco08g1046 435 Pfam Pectate lyase 168 349 IPR002022 -
Cco08g1046 435 SUPERFAMILY Pectin lyase-like 75 397 IPR011050 -
Cco08g1046 435 PANTHER PECTATE LYASE 18-RELATED 18 430 IPR045032 GO:0030570(InterPro)
Cco08g1046 435 Pfam Pectate lyase, N terminus 25 72 IPR007524 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1046 Cco-Chr8:22251988 Cco10g1473 Cco-Chr10:27827807 1.50E-185 dispersed
Cco08g1046 Cco-Chr8:22251988 Cco05g2722 Cco-Chr5:35129545 1.20E-190 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1046 K01728 - csv:101217922 822.772