Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1046 | ATGGTTGGCTTTAGAACCTTGTTCGTGTGTTCACTGTTGTTTTTTGTGGTAGCAAATGCGGATGTGGATGAGGATGAATACTGGCGGAATCGTGCCGCCGAAGCTCAAAAAATAGCCCAAGATGCCTACAATCCTGACCCCGAACTTGTTACCGATAACTTGAACGCCGCCGTCAGTCGGGCGATGTTGGGTCGCAACAGTACGAGAAGGAGTCTGAAGAGGAAATATAAAGGACCATGTTTGGCGACGAACCCCATTGACAGATGTTGGAGATGCGACCCAAATTGGGCCACCAACCGAAAGAAGCTAGCGGAATGTCCGTTGGGGTTCGGCCACAAAACCATTGGGGGAAAGAGAGGACCCATCTATGTGGTGACGGATGCATCGGACGACGACTTGATTAATCCTAAACCTGGAACCCTGCGCTATGGCGTGATCCAAAAAGGTCCACTTTGGATCATCTTCGGGCGAAGCATGATCATCAGGCTGAGTCAAGAGCTAATGATCTCGAGCGACAAGACCATCGACGCTCGTGGCGCCAATGTCCACATTGCCTACGGCGCTGGCCTCACCATTCAATTTGTCAACAATGTGATCATCCATAACCTTCACATCCACGACATTATCTCCAAATCAGGTGGAATGATTAGAGATTCTGTGGACCATTATGGGTTTAGAACACAAAGCGATGGCGATGGCATCTCCATATTTGGGTCTACGAATGTTTGGATCGACCATATTTCCATGTCCAATTGTCAAGATGGTCTTATCGACGCCATCATGGGTTCCACTGCAATCACCATCTCCAATTGTCATTTCACTCACCACAATGAGGTGATGTTGTTCGGAGCCAGCGATAGCTACGCAGGTGACTCGGTTATGCAAATAACGATTGCATTCAACCACTTTGGGAGGGGATTGGTTCAAAGAATGCCAAGGTGCAGATGGGGTTTCTTCCATGTTGTTAACAATGATTACACCCACTGGCTTATGTATGCAATTGGTGGTAGCCAACACCCTACCATTGTTAGCCAAGGCAATCGTTTCATTGCTCCTCCAAACCCTAATGCCAAACAGGTAACAAAGAGAGAATATGCAATGGAGGCGGAGTGGAAGAAATGGTCATGGAGATCTGAAGGAGATTTGCTGATGAATGGAGCAGTGTTTATTCCATCAGGTGACCAAACCAAAGGGAAGAAGAAGGGTTTATCAAGATACGATATGATTTCCTTCAAGCCAGGAACATACGTCAGGAGACTTGCACGCTTCTCTGGCACACTTGCATGCGCCCCACGCAAACCATGCTAG | 1308 | 47.78 | MVGFRTLFVCSLLFFVVANADVDEDEYWRNRAAEAQKIAQDAYNPDPELVTDNLNAAVSRAMLGRNSTRRSLKRKYKGPCLATNPIDRCWRCDPNWATNRKKLAECPLGFGHKTIGGKRGPIYVVTDASDDDLINPKPGTLRYGVIQKGPLWIIFGRSMIIRLSQELMISSDKTIDARGANVHIAYGAGLTIQFVNNVIIHNLHIHDIISKSGGMIRDSVDHYGFRTQSDGDGISIFGSTNVWIDHISMSNCQDGLIDAIMGSTAITISNCHFTHHNEVMLFGASDSYAGDSVMQITIAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIVSQGNRFIAPPNPNAKQVTKREYAMEAEWKKWSWRSEGDLLMNGAVFIPSGDQTKGKKKGLSRYDMISFKPGTYVRRLARFSGTLACAPRKPC | 435 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 22251988 | 22253540 | + | CcPI632755_08g010460.1 | Cco08g1046 | 185520 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1046 | 435 | Gene3D | - | 83 | 428 | IPR012334 | - | |
Cco08g1046 | 435 | PRINTS | Pollen allergen Amb family signature | 230 | 251 | IPR018082 | - | |
Cco08g1046 | 435 | PRINTS | Pollen allergen Amb family signature | 332 | 351 | IPR018082 | - | |
Cco08g1046 | 435 | PRINTS | Pollen allergen Amb family signature | 106 | 123 | IPR018082 | - | |
Cco08g1046 | 435 | PRINTS | Pollen allergen Amb family signature | 166 | 182 | IPR018082 | - | |
Cco08g1046 | 435 | PRINTS | Pollen allergen Amb family signature | 130 | 155 | IPR018082 | - | |
Cco08g1046 | 435 | PRINTS | Pollen allergen Amb family signature | 374 | 398 | IPR018082 | - | |
Cco08g1046 | 435 | PRINTS | Pollen allergen Amb family signature | 406 | 429 | IPR018082 | - | |
Cco08g1046 | 435 | PRINTS | Pollen allergen Amb family signature | 310 | 329 | IPR018082 | - | |
Cco08g1046 | 435 | SMART | amb_all | 158 | 355 | IPR002022 | - | |
Cco08g1046 | 435 | Pfam | Pectate lyase | 168 | 349 | IPR002022 | - | |
Cco08g1046 | 435 | SUPERFAMILY | Pectin lyase-like | 75 | 397 | IPR011050 | - | |
Cco08g1046 | 435 | PANTHER | PECTATE LYASE 18-RELATED | 18 | 430 | IPR045032 | GO:0030570(InterPro) | |
Cco08g1046 | 435 | Pfam | Pectate lyase, N terminus | 25 | 72 | IPR007524 | GO:0030570(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g1046 | Cco-Chr8:22251988 | Cco10g1473 | Cco-Chr10:27827807 | 1.50E-185 | dispersed | |
Cco08g1046 | Cco-Chr8:22251988 | Cco05g2722 | Cco-Chr5:35129545 | 1.20E-190 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1046 | K01728 | - | csv:101217922 | 822.772 |