Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1055 ATGCGACCCAACGTGGCCTTCAGTGCCCCGGAGCCTCGACCCACGCTACATTGGTGTCAGAACGAACCGGATGGCCCATTCTGCTCCCCCACCCGGTTCGTCCTTATGGCGATCCACGCCGGACCTTTTTCTTTTTCCATCACCGTCAGGGTATTCTCGACTTTTTACCCCATTCCTTACTGCCACTTCCAAGTTCCAACTTCGAATCTACGCCTCGATTCTCTCTCCTCAATCCCATTTCTCACTCTAAATTCCCTTCCACCATGCTTTACACTTCCCTCTCTTTCCTCCTCTGATTCACCGGCACCGCCCTTGCCCCACCGGAAAATCCTTTTGCTTCGGGTTCCTACTGTTTCTATTCTGTTTGATTCGTCTTTTCTTCTCTCTTTGTTTGTTATTGTTCTTCTCTGTCTTCTTTATGTGAGTGGGGATTCAGGTTGGAAAAACATGTCTTCCTCTAGACCTAGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGGCATAGCACCAGAATTATTGCTCAAACATCTGTGGATGCGAAGCTCCAAGCTGATTTTGAGGAATCTGGGAATTCTTTCGACTACTCAAGTTCAGTGCGTGTCTCCACCGACGTTAGTGGAGATCACCAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAGAAAGGCAAGCTTATTCAACCATTTGGTTGCTTGTTGGCCTTAGATGACAAAACATTCAAGGTTATTGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATAGGGACTGATGTAAGGACTATTTTCACTGCACCAAGTGCTTCTGCACTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACGCTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCCGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTGAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTACAATCATATAAACTTGCTGCCAAAGCAATTACTAGATTGCAGTCTTTGCCTAGTGGGTGCATGGCTAGGCTTTGTGACACAATGGTCCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAGTTCCATGATGACGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGCCTTGAGCCATATCTTGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCACGTTTTTTGTTCATGAAAAACAAGGTCCGCATGATTGTAGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCACTTACAGTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGAGATGAAGATGGTGAGGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGATTATGGGGGTTGGTAGTATGTCATAATACAAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAGCTCAAGTATTTGCCATTCACGTGAACAAGGAATTGGAGTTGGAAAATCAAATTATAGAAAAAAATATTCTTCGTACACAGACACTCTTGTGCGATATGCTAATGCGGGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAAATCGGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGCGATTGGGAATGACACCTAGTGACTTCCAGTTGCGGGACATTGCCTCGTGGCTTTCCGAATATCATATGGATTCAACAGGGTTGAGTACTGACAGCTTGTATGATGCAGGATATCCTGGAGCTCTTGCTTTAGGTGATGAAGTCTGTGGGATGGCTGCCGTGAGGATAACTACTAATGATATGATTTTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGGTGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGATGATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTCAAGACAAGAAGTTTGCCTTGGAAGGACTACGAAATGGATGCAATCCACTCTTTACAACTTATCCTTAGAAATACTTTCAAAGATACAGATACAGCTGAAATAAATCGAAAATCAATTCAAATGACACTTGGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCAATTTTAGCAGTTGATGTAGATGGGTCAATTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTTCCTGTGGATAAAGCTATTGGCAAGCATTTGCTTACGTTAGTGGAAGATTCTTCTGTAGAAGTTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTTGAGATCAAGACACATGGTTCTCATATTGAGGTTGGCTCCATCAGGCTAGTTGTAAATGCTTGTGCAAGTAGGGACCTGCGTGAGAATGTTGTGGGGGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTCATGGACAAGTTCACTCGATTAGAAGGTGATTACAAAGCTATCGTACAAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGACAAAATTAACTGGGTGGTCACGTGAAGAAGTAATTGATAAGATGCTTTTGGGAGAGGTTTTTGGCGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTGGTTTTGAACAATGCCATGAGTGGTCAAGATCCGGAAAAGGTTTCTTTTGGCTTCTTTGCTCGGAATGGGATGTACGTGGAATGTCTTCTATGTGTGAATAAGATCTTGGATAAGGATGGGGTGGTTACAGGAGTTTTTTGCTTTTTGCAGCTCGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAGCAGACTGCATTGAAGAGATTGAGAGCATTGGGATACATAAAAAGGCAGATACAAAATCCTCTTTCTGGGATAATCTTTTCAAGAAGATTATTGGAACGGACTGAGTTGGGAATAGAACAAAAGGAAATTCTGCATACTAGCGTACACTGTCAAAAGCAGATCTCCAAGGTTCTCGAAGAGTCGGACCTTGATAAAATTATTGACGGGTTTATTGATTTGGAAATGGTCGAGTTTACATTGCATGAAGTATTGACGGTATCAATCAGTCAAGTGATGATAAAGAGCAAAGGAAAGGGTATCCAGATAGTCAATGAAACTCTAGAAGAGGCCATGTCCGAGACCTTATATGGTGATAGTTTGAGGCTTCAACAAGTCTTGGCAGACTTTCTATTGCTATCAGTTAGTTATGCGCCAGCAGGAGGCCAGCTAACAATTTCAACCAACTTGACCAAAGATCAATTAGGAAAGTCGGTTCATCTGGTGCATTTAGAGTTCAGGATAACGTATACTGGAGGCGGTATACCTGAATCATTGCTGAATGAGATGTTTGGTAGTGAGGAGGATGCTTCGGAGGAGGGTTTTAGTCTACTCATCAGTAGAAAACTAGTGAAGCTGATGAATGGAGATGTAAGATATATGAGAGAAGCAGGTAAGTCAAGCTTCATCATAACTGTTGAGCTTGCTGCTGCACACAAGGCAAGGTTAAGGATGGTGGTAGGGCAGGTCAAGGAGCCCCCCATTTCTCCTTTGTCCCTGTGGAGATTTTAA 3879 42.87 MRPNVAFSAPEPRPTLHWCQNEPDGPFCSPTRFVLMAIHAGPFSFSITVRVFSTFYPIPYCHFQVPTSNLRLDSLSSIPFLTLNSLPPCFTLPSLSSSDSPAPPLPHRKILLLRVPTVSILFDSSFLLSLFVIVLLCLLYVSGDSGWKNMSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVSTDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDGEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGMTPSDFQLRDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITTNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTAEINRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSINGWNTKIAELTGLPVDKAIGKHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWSREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFARNGMYVECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGIIFSRRLLERTELGIEQKEILHTSVHCQKQISKVLEESDLDKIIDGFIDLEMVEFTLHEVLTVSISQVMIKSKGKGIQIVNETLEEAMSETLYGDSLRLQQVLADFLLLSVSYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRITYTGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKARLRMVVGQVKEPPISPLSLWRF 1292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22338897 22347450 - CcPI632755_08g010550.1 Cco08g1055 185529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1055 1292 Pfam PAS fold 218 334 IPR013654 GO:0006355(InterPro)
Cco08g1055 1292 CDD PAS 909 1020 IPR000014 -
Cco08g1055 1292 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 367 539 IPR016132 -
Cco08g1055 1292 FunFam Phytochrome 761 892 - -
Cco08g1055 1292 ProSitePatterns Phytochrome chromophore attachment site signature. 467 476 IPR013516 -
Cco08g1055 1292 MobiDBLite consensus disorder prediction 148 168 - -
Cco08g1055 1292 ProSiteProfiles PAS repeat profile. 765 835 IPR000014 -
Cco08g1055 1292 Gene3D - 554 727 IPR043150 -
Cco08g1055 1292 PANTHER OS08G0260000 PROTEIN 150 1143 - -
Cco08g1055 1292 Gene3D PAS domain 760 897 - -
Cco08g1055 1292 Pfam His Kinase A (phospho-acceptor) domain 1043 1103 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco08g1055 1292 Coils Coil 546 566 - -
Cco08g1055 1292 ProSiteProfiles Histidine kinase domain profile. 1049 1268 IPR005467 -
Cco08g1055 1292 NCBIfam PAS domain S-box protein 772 888 IPR000014 -
Cco08g1055 1292 SMART pas_2 897 966 IPR000014 -
Cco08g1055 1292 SMART pas_2 767 833 IPR000014 -
Cco08g1055 1292 FunFam Phytochrome 554 685 - -
Cco08g1055 1292 SUPERFAMILY GAF domain-like 557 734 - -
Cco08g1055 1292 Pfam Phytochrome region 562 736 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 CDD HATPase_Phy-like 1153 1264 IPR044767 -
Cco08g1055 1292 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1154 1264 IPR003594 -
Cco08g1055 1292 PRINTS Phytochrome signature 282 304 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 PRINTS Phytochrome signature 579 599 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 PRINTS Phytochrome signature 787 802 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 PRINTS Phytochrome signature 664 683 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 PRINTS Phytochrome signature 467 488 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 PRINTS Phytochrome signature 697 715 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 PRINTS Phytochrome signature 860 877 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 PRINTS Phytochrome signature 768 784 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 PRINTS Phytochrome signature 880 900 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 PRINTS Phytochrome signature 382 401 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 SUPERFAMILY PYP-like sensor domain (PAS domain) 771 878 IPR035965 -
Cco08g1055 1292 Pfam GAF domain 370 548 IPR003018 GO:0005515(InterPro)
Cco08g1055 1292 ProSiteProfiles PAS repeat profile. 898 950 IPR000014 -
Cco08g1055 1292 SMART HKATPase_4 1154 1266 IPR003594 -
Cco08g1055 1292 SMART HisKA_10 1042 1106 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco08g1055 1292 Gene3D PAS domain 223 470 - -
Cco08g1055 1292 Gene3D PAS domain 912 1026 - -
Cco08g1055 1292 Gene3D - 348 710 IPR029016 -
Cco08g1055 1292 Gene3D - 1105 1270 IPR036890 -
Cco08g1055 1292 SMART gaf_1 367 559 IPR003018 GO:0005515(InterPro)
Cco08g1055 1292 SUPERFAMILY PYP-like sensor domain (PAS domain) 912 1018 IPR035965 -
Cco08g1055 1292 CDD PAS 776 882 IPR000014 -
Cco08g1055 1292 SUPERFAMILY PYP-like sensor domain (PAS domain) 223 335 IPR035965 -
Cco08g1055 1292 Pfam PAS fold 768 882 IPR013767 GO:0006355(InterPro)
Cco08g1055 1292 Pfam PAS fold 898 1020 IPR013767 GO:0006355(InterPro)
Cco08g1055 1292 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1100 1261 IPR036890 -
Cco08g1055 1292 SUPERFAMILY GAF domain-like 347 546 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0306 Cco-Chr2:2747414 Cco08g1055 Cco-Chr8:22338897 0.00E+00 dispersed
Cco05g0775 Cco-Chr5:6464507 Cco08g1055 Cco-Chr8:22338897 0.00E+00 dispersed
Cco08g1055 Cco-Chr8:22338897 Cco08g1058 Cco-Chr8:22379603 0.00E+00 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1055 K12120 - csv:101208491 2155.18