Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1055 ATGCGACCCAACGTGGCCTTCAGTGCCCCGGAGCCTCGACCCACGCTACATTGGTGTCAGAACGAACCGGATGGCCCATTCTGCTCCCCCACCCGGTTCGTCCTTATGGCGATCCACGCCGGACCTTTTTCTTTTTCCATCACCGTCAGGGTATTCTCGACTTTTTACCCCATTCCTTACTGCCACTTCCAAGTTCCAACTTCGAATCTACGCCTCGATTCTCTCTCCTCAATCCCATTTCTCACTCTAAATTCCCTTCCACCATGCTTTACACTTCCCTCTCTTTCCTCCTCTGATTCACCGGCACCGCCCTTGCCCCACCGGAAAATCCTTTTGCTTCGGGTTCCTACTGTTTCTATTCTGTTTGATTCGTCTTTTCTTCTCTCTTTGTTTGTTATTGTTCTTCTCTGTCTTCTTTATGTGAGTGGGGATTCAGGTTGGAAAAACATGTCTTCCTCTAGACCTAGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGGCATAGCACCAGAATTATTGCTCAAACATCTGTGGATGCGAAGCTCCAAGCTGATTTTGAGGAATCTGGGAATTCTTTCGACTACTCAAGTTCAGTGCGTGTCTCCACCGACGTTAGTGGAGATCACCAACCTAGGTCAGACAAAGTTACAACAGCTTATCTCCATCATATACAGAAAGGCAAGCTTATTCAACCATTTGGTTGCTTGTTGGCCTTAGATGACAAAACATTCAAGGTTATTGCGTATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATAGGGACTGATGTAAGGACTATTTTCACTGCACCAAGTGCTTCTGCACTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACGCTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCCGGAAAACCCTTCTATGCAATTGTGCATCGTGTTACTGGAAGCTTAATCATTGACTTTGAGCCTGTGAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTACAATCATATAAACTTGCTGCCAAAGCAATTACTAGATTGCAGTCTTTGCCTAGTGGGTGCATGGCTAGGCTTTGTGACACAATGGTCCAAGAAGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAGTTCCATGATGACGATCACGGGGAAGTGATCTCTGAAGTCACAAAGCCTGGCCTTGAGCCATATCTTGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCACGTTTTTTGTTCATGAAAAACAAGGTCCGCATGATTGTAGATTGTCGTGCAAAACATTTAAAAGTACTCCAAGATGAGAAATTACAGTTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCACTTACAGTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGAGATGAAGATGGTGAGGGCCCTGCTTTGCAGCAACAAAAGAGAAAGAGATTATGGGGGTTGGTAGTATGTCATAATACAAGTCCCAGATTTGTTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAGCTCAAGTATTTGCCATTCACGTGAACAAGGAATTGGAGTTGGAAAATCAAATTATAGAAAAAAATATTCTTCGTACACAGACACTCTTGTGCGATATGCTAATGCGGGATGCTCCTTTAGGTATTGTGTCAAGGAGTCCTAACATAATGGATCTTGTCAAATCGGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGCGATTGGGAATGACACCTAGTGACTTCCAGTTGCGGGACATTGCCTCGTGGCTTTCCGAATATCATATGGATTCAACAGGGTTGAGTACTGACAGCTTGTATGATGCAGGATATCCTGGAGCTCTTGCTTTAGGTGATGAAGTCTGTGGGATGGCTGCCGTGAGGATAACTACTAATGATATGATTTTTTGGTTTCGATCTCACACTGCTTCAGAGATTCGGTGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGATGATGGCAGAAAAATGCATCCAAGATCATCTTTCAAGGCTTTCCTTGAAGTAGTCAAGACAAGAAGTTTGCCTTGGAAGGACTACGAAATGGATGCAATCCACTCTTTACAACTTATCCTTAGAAATACTTTCAAAGATACAGATACAGCTGAAATAAATCGAAAATCAATTCAAATGACACTTGGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTAACAAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCAATTTTAGCAGTTGATGTAGATGGGTCAATTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTTCCTGTGGATAAAGCTATTGGCAAGCATTTGCTTACGTTAGTGGAAGATTCTTCTGTAGAAGTTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTTGAGATCAAGACACATGGTTCTCATATTGAGGTTGGCTCCATCAGGCTAGTTGTAAATGCTTGTGCAAGTAGGGACCTGCGTGAGAATGTTGTGGGGGTGTGTTTTGTAGCACAAGATATCACTGGTCAGAAGATGGTCATGGACAAGTTCACTCGATTAGAAGGTGATTACAAAGCTATCGTACAAAATCCCAATCCATTAATCCCTCCAATATTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGACAAAATTAACTGGGTGGTCACGTGAAGAAGTAATTGATAAGATGCTTTTGGGAGAGGTTTTTGGCGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGGGTGGTTTTGAACAATGCCATGAGTGGTCAAGATCCGGAAAAGGTTTCTTTTGGCTTCTTTGCTCGGAATGGGATGTACGTGGAATGTCTTCTATGTGTGAATAAGATCTTGGATAAGGATGGGGTGGTTACAGGAGTTTTTTGCTTTTTGCAGCTCGCTAGTCATGAGTTGCAACAAGCACTAAATATCCAACGATTATGTGAGCAGACTGCATTGAAGAGATTGAGAGCATTGGGATACATAAAAAGGCAGATACAAAATCCTCTTTCTGGGATAATCTTTTCAAGAAGATTATTGGAACGGACTGAGTTGGGAATAGAACAAAAGGAAATTCTGCATACTAGCGTACACTGTCAAAAGCAGATCTCCAAGGTTCTCGAAGAGTCGGACCTTGATAAAATTATTGACGGGTTTATTGATTTGGAAATGGTCGAGTTTACATTGCATGAAGTATTGACGGTATCAATCAGTCAAGTGATGATAAAGAGCAAAGGAAAGGGTATCCAGATAGTCAATGAAACTCTAGAAGAGGCCATGTCCGAGACCTTATATGGTGATAGTTTGAGGCTTCAACAAGTCTTGGCAGACTTTCTATTGCTATCAGTTAGTTATGCGCCAGCAGGAGGCCAGCTAACAATTTCAACCAACTTGACCAAAGATCAATTAGGAAAGTCGGTTCATCTGGTGCATTTAGAGTTCAGGATAACGTATACTGGAGGCGGTATACCTGAATCATTGCTGAATGAGATGTTTGGTAGTGAGGAGGATGCTTCGGAGGAGGGTTTTAGTCTACTCATCAGTAGAAAACTAGTGAAGCTGATGAATGGAGATGTAAGATATATGAGAGAAGCAGGTAAGTCAAGCTTCATCATAACTGTTGAGCTTGCTGCTGCACACAAGGCAAGGTTAAGGATGGTGGTAGGGCAGGTCAAGGAGCCCCCCATTTCTCCTTTGTCCCTGTGGAGATTTTAA 3879 42.87 MRPNVAFSAPEPRPTLHWCQNEPDGPFCSPTRFVLMAIHAGPFSFSITVRVFSTFYPIPYCHFQVPTSNLRLDSLSSIPFLTLNSLPPCFTLPSLSSSDSPAPPLPHRKILLLRVPTVSILFDSSFLLSLFVIVLLCLLYVSGDSGWKNMSSSRPSQSSSNSGRSRHSTRIIAQTSVDAKLQADFEESGNSFDYSSSVRVSTDVSGDHQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTGSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGCMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHLKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDGEGPALQQQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGMTPSDFQLRDIASWLSEYHMDSTGLSTDSLYDAGYPGALALGDEVCGMAAVRITTNDMIFWFRSHTASEIRWGGAKHEHGEKDDGRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDTAEINRKSIQMTLGDLKIEGRQELESVTSEMVRLIETATVPILAVDVDGSINGWNTKIAELTGLPVDKAIGKHLLTLVEDSSVEVVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSIRLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVQNPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWSREEVIDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVSFGFFARNGMYVECLLCVNKILDKDGVVTGVFCFLQLASHELQQALNIQRLCEQTALKRLRALGYIKRQIQNPLSGIIFSRRLLERTELGIEQKEILHTSVHCQKQISKVLEESDLDKIIDGFIDLEMVEFTLHEVLTVSISQVMIKSKGKGIQIVNETLEEAMSETLYGDSLRLQQVLADFLLLSVSYAPAGGQLTISTNLTKDQLGKSVHLVHLEFRITYTGGGIPESLLNEMFGSEEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKARLRMVVGQVKEPPISPLSLWRF 1292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22338897 22347450 - CcPI632755_08g010550.1 Cco08g1055 185529

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1055 1292 Pfam PAS fold 218 334 IPR013654 GO:0006355(InterPro)
Cco08g1055 1292 CDD PAS 909 1020 IPR000014 -
Cco08g1055 1292 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 367 539 IPR016132 -
Cco08g1055 1292 FunFam Phytochrome 761 892 - -
Cco08g1055 1292 ProSitePatterns Phytochrome chromophore attachment site signature. 467 476 IPR013516 -
Cco08g1055 1292 MobiDBLite consensus disorder prediction 148 168 - -
Cco08g1055 1292 ProSiteProfiles PAS repeat profile. 765 835 IPR000014 -
Cco08g1055 1292 Gene3D - 554 727 IPR043150 -
Cco08g1055 1292 PANTHER OS08G0260000 PROTEIN 150 1143 - -
Cco08g1055 1292 Gene3D PAS domain 760 897 - -
Cco08g1055 1292 Pfam His Kinase A (phospho-acceptor) domain 1043 1103 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco08g1055 1292 Coils Coil 546 566 - -
Cco08g1055 1292 ProSiteProfiles Histidine kinase domain profile. 1049 1268 IPR005467 -
Cco08g1055 1292 NCBIfam PAS domain S-box protein 772 888 IPR000014 -
Cco08g1055 1292 SMART pas_2 897 966 IPR000014 -
Cco08g1055 1292 SMART pas_2 767 833 IPR000014 -
Cco08g1055 1292 FunFam Phytochrome 554 685 - -
Cco08g1055 1292 SUPERFAMILY GAF domain-like 557 734 - -
Cco08g1055 1292 Pfam Phytochrome region 562 736 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 CDD HATPase_Phy-like 1153 1264 IPR044767 -
Cco08g1055 1292 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1154 1264 IPR003594 -
Cco08g1055 1292 PRINTS Phytochrome signature 282 304 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 PRINTS Phytochrome signature 579 599 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 PRINTS Phytochrome signature 787 802 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 PRINTS Phytochrome signature 664 683 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 PRINTS Phytochrome signature 467 488 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 PRINTS Phytochrome signature 697 715 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 PRINTS Phytochrome signature 860 877 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 PRINTS Phytochrome signature 768 784 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 PRINTS Phytochrome signature 880 900 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 PRINTS Phytochrome signature 382 401 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1055 1292 SUPERFAMILY PYP-like sensor domain (PAS domain) 771 878 IPR035965 -
Cco08g1055 1292 Pfam GAF domain 370 548 IPR003018 GO:0005515(InterPro)
Cco08g1055 1292 ProSiteProfiles PAS repeat profile. 898 950 IPR000014 -
Cco08g1055 1292 SMART HKATPase_4 1154 1266 IPR003594 -
Cco08g1055 1292 SMART HisKA_10 1042 1106 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco08g1055 1292 Gene3D PAS domain 223 470 - -
Cco08g1055 1292 Gene3D PAS domain 912 1026 - -
Cco08g1055 1292 Gene3D - 348 710 IPR029016 -
Cco08g1055 1292 Gene3D - 1105 1270 IPR036890 -
Cco08g1055 1292 SMART gaf_1 367 559 IPR003018 GO:0005515(InterPro)
Cco08g1055 1292 SUPERFAMILY PYP-like sensor domain (PAS domain) 912 1018 IPR035965 -
Cco08g1055 1292 CDD PAS 776 882 IPR000014 -
Cco08g1055 1292 SUPERFAMILY PYP-like sensor domain (PAS domain) 223 335 IPR035965 -
Cco08g1055 1292 Pfam PAS fold 768 882 IPR013767 GO:0006355(InterPro)
Cco08g1055 1292 Pfam PAS fold 898 1020 IPR013767 GO:0006355(InterPro)
Cco08g1055 1292 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1100 1261 IPR036890 -
Cco08g1055 1292 SUPERFAMILY GAF domain-like 347 546 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1055 K12120 - - csv:101208491 2155.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0306 Cco-Chr2:2747414 Cco08g1055 Cco-Chr8:22338897 0.00E+00 dispersed
Cco05g0775 Cco-Chr5:6464507 Cco08g1055 Cco-Chr8:22338897 0.00E+00 dispersed
Cco08g1055 Cco-Chr8:22338897 Cco08g1058 Cco-Chr8:22379603 0.00E+00 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g0065 . 5 1211 Histidine Kinase Gene Family AT2G17820 64.3 0.0e+00 1445.6
Cco11g0125 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1343.9
Cco01g0703 . 24 966 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1296.2
Cco02g0290 . 279 1231 Histidine Kinase Gene Family AT2G01830 54.0 6.1e-278 954.1
Cco06g0219 . 96 1022 Histidine Kinase Gene Family AT2G01830 53.8 7.5e-268 920.6
Cco02g1037 . 304 1252 Histidine Kinase Gene Family AT2G01830 51.8 1.4e-266 916.4
Cco05g1829 . 1 1010 Histidine Kinase Gene Family AT5G10720 56.4 1.0e-289 993.0
Cco08g1055 . 150 1269 Histidine Kinase Gene Family AT1G09570 80.3 0.0e+00 1836.2
Cco08g1058 . 3 1087 Histidine Kinase Gene Family AT1G09570 67.8 0.0e+00 1519.2
Cco02g0306 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.9 0.0e+00 1206.8
Cco05g0775 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1193.3
Cco05g0775 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.9 0.0e+00 1670.2
Cco03g0733 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.9 0.0e+00 1245.3
Cco08g1055 . 170 1203 Histidine Kinase Gene Family AT2G18790 53.6 0.0e+00 1092.8
Cco02g0306 . 26 1069 Histidine Kinase Gene Family AT2G18790 52.3 0.0e+00 1080.1
Cco08g1058 . 22 1026 Histidine Kinase Gene Family AT2G18790 51.0 2.6e-295 1011.9
Cco02g0306 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.7 0.0e+00 1365.9
Cco05g0775 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.7 0.0e+00 1145.2
Cco08g1055 . 158 1263 Histidine Kinase Gene Family AT5G35840 51.9 0.0e+00 1117.4
Cco05g0775 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.9 0.0e+00 1709.9
Cco03g0733 . 32 1094 Histidine Kinase Gene Family AT4G16250 59.4 0.0e+00 1267.3
Cco08g1055 . 157 1264 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1137.1
Cco02g0306 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1119.8
Cco03g0733 . 15 1094 Histidine Kinase Gene Family AT4G18130 63.4 0.0e+00 1347.0
Cco05g0775 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.5 0.0e+00 1263.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56