Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1056 ATGGATCCACCTACTCTGATCAACGAAGGCTCATTTCCAAGTAACTCAAATGCCAATGCCAATATCACGCCCTTCAATCTCTCAGAGATCTGGCACTTCCCAATTAATGGCGGAACTAGTGTTGAGGAACCTGCACCTTCTCTCGCTCTCAGGATGGCTCACCTCGCTCAAAATTTGGGCCACTTTGGAGAGATTGCCATGGGGAATCCAGAGGTTTCCCCTACTGACCCAGTCACTTTGCAATTGCAGCAGAGACTAGCTCATGGTCATGGTGTTTCCAAGAGGCGCCGTGATGCAGAGCAAGATTCGCCTAAGGTCAGTTCCACCAGCAATGGCAACAATGCCAACGGCAATAGCGGCGCCGCGAATGACTCTGGTGGAAAACGCCTTAAAACAGCAGCGTGTAGAGATGATAACCACGAATCCAAAACAGAAGCGGAACCCAGATCTGGGAAGGCCGAGCAGAACTCCCAGCCACCTCCAGAACAACCCAAACAGGATTACATCCATGTGCGAGCGAGAAGGGGCCAAGCAACTGATAGCCATAGTTTGGCAGAAAGGGCTAGAAGAGAAAAGATAAGTGAGAGAATGAAAATTCTACAAGACTTGGTCCCTGGGTGTAATAAGGTCATTGGAAAGGCACTTGTACTTGATGAGATAATAAATTACATTCAATCTCTTCAGCGTCAGGTTGAGTTCTTGTCAATGAAGCTTGAAGCAGTTAATTCGAGAATTGGCCCTGGGATTGAAGTGTTTCCTCCTAAAGATTATGGTCAACAAACATTCGAAACAACTGGTGTTGCATTTGGTTCACAAGCAACAAGAGAATACAGCCGTGACTCATCACCGGAATGGCTGCATATGCAGATTGGTGGCGGTTTTGAAAGAACGAGCCCTTCAGCTGCCGCCGCCCGTTCCCTGATCCACGGTTGCCAACGCCCGCCCGCAGGAAAACGAACAATCATTCACTAA 972 48.46 MDPPTLINEGSFPSNSNANANITPFNLSEIWHFPINGGTSVEEPAPSLALRMAHLAQNLGHFGEIAMGNPEVSPTDPVTLQLQQRLAHGHGVSKRRRDAEQDSPKVSSTSNGNNANGNSGAANDSGGKRLKTAACRDDNHESKTEAEPRSGKAEQNSQPPPEQPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRIGPGIEVFPPKDYGQQTFETTGVAFGSQATREYSRDSSPEWLHMQIGGGFERTSPSAAAARSLIHGCQRPPAGKRTIIH 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22363287 22370167 + CcPI632755_08g010560.1 Cco08g1056 185530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1056 323 MobiDBLite consensus disorder prediction 85 165 - -
Cco08g1056 323 MobiDBLite consensus disorder prediction 130 150 - -
Cco08g1056 323 FunFam Basic helix-loop-helix transcription factor 174 246 - -
Cco08g1056 323 MobiDBLite consensus disorder prediction 104 125 - -
Cco08g1056 323 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 245 IPR036638 GO:0046983(InterPro)
Cco08g1056 323 SMART finulus 183 233 IPR011598 GO:0046983(InterPro)
Cco08g1056 323 Coils Coil 224 244 - -
Cco08g1056 323 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 93 259 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cco08g1056 323 CDD bHLH_AtBPE_like 167 252 - -
Cco08g1056 323 Gene3D - 174 246 IPR036638 GO:0046983(InterPro)
Cco08g1056 323 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 227 IPR011598 GO:0046983(InterPro)
Cco08g1056 323 Pfam Helix-loop-helix DNA-binding domain 181 228 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0529 Cco-Chr2:4951182 Cco08g1056 Cco-Chr8:22363287 7.80E-35 dispersed
Cco02g1832 Cco-Chr2:31226410 Cco08g1056 Cco-Chr8:22363287 6.00E-17 dispersed
Cco08g1056 Cco-Chr8:22363287 Cco09g0834 Cco-Chr9:7790126 1.50E-33 dispersed
Cco06g1859 Cco-Chr6:28832593 Cco08g1056 Cco-Chr8:22363287 3.80E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59784 PF00010 HLH 2.80E-08 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1056 - - - 0.0