Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco08g1058 | ATGTCATCAGCAGGTAGACCAAGCCAAAGTTCCAGGAACACGGGAAGAGGATCTTCTTCCTCCTCACAATCAAGACACATCTCCAGAATCCTCACTCAAACCTCCATAGATGCAAAGCTTCAATCCCACTTTGAGCAATCCGGTTCTTCCTTTGACTACTCCACTTCAATCCATCTCACCACCAACCTAACTGCCGCACCACCCTCCGCCGCTGCCGCCACCACCACCGCATACCTCCACCAAATCCAAAAATCCAACCTCATCCAACCCTTTGGCTGCCTTTTGGCCCTCCACCCAACCACCCTCAAACTCATCGCCTTCACCCAAAATGCCCCAGAAATGCTCACCACCGTTGCCCACACCGTCCCCGATGGCGACAACCACCCCCTCCTCGCCATCGGCACGGACCTCCGAGCCATCTTCACCAACCCCACTGCCACCGCCCTCCTCAAGGCCCTCGCCTTCCCCGACGTCACCCTCCTCAACCCCATTCTAGTCCACTCCAAGTCCTCAGGGAAGCCCTTCTACGCCATTCTCCACCGCGTCACCGGTAGCCTTATCATTGACTTCGAGCCCCTCAAACCCGACCAAGTCCCCGTCACCGCTGCAGGAGCTCTCCAATCCTATAAGCTCGCTGCCAAAGCTATCACTTGTCTCCAGGCTCTTCCTAGTGGGAGCCTGGCTAGACTCTGTGACACCATGGTTCAAGAACTCTTTGAGTTGACAGGTTACGATAGAGTTATGGCATATAGGTTTCATGACGATGATCATGGCGAGGTATTTTCCGAGGTTACAAAGCCTGGCCTTGAACCTTATCTAGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCTAGGTTTTTATTCATGAAGAATAAAGTTAGAATGATTGTGGATTGTAGAGCCAAACATGTGAAAGTCATTCAAGATCACAATCTTGATTTTGATTTGACTTTGTGTGGGTCCACTTTAAGAGCTCCTCATAGTTGCCATTTGCAATATATGGAGAATATGGACTCTATTGCCTCTTTGGTTATGGCCATTGTAGTGAATGAAGAGGAGGATGAAGAGAATTTCAATCAAAATAACAACAATAATGATGCTTCTTTGCAAAAACATAAGAGGAAAAGATTGTGGGGTTTGGTAGTTTGTCATAACACAACTCCTAGATTTGTCCCTTTTCCACTTAGATATGCTTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAGTTAGAGAATCATATTTTGGAGAAAAATATCTTGAGAACTCAAACACTTTTATGTGACATGTTAATGCGTGATGCTCCTTTAGGAATTGTGTCAAGGACTCCTAACGTAATGGATCTTGTCAAATCTGATGAAGCTGCATTATTGTACGATAACAAGGTATGGAGATTAGGGATAACCCCTACTGATTTCCATCTTCAGGACATTGCTTCATGGATTTTTGAGTATCATGTGGATTCCACTGGTTTGAATACTGATAGCTTGTATGATGCCGGGTACCCGGGCGCACTTGAGCTAGGCGATGCAGTGTGCGGGATGGCTGTTGTGAGGATATCTTCGGAGGACATGATTTTCTGGTTTCGATCGCACACCGCATCGGAGATTCTGTGGGGCGGGGCAAAGCATGAGCCTGGTGACAAGGATGATGGAAGGAAAATGCATCCAAGATCATCTTTTAAGGCTTTTCTTGAAGTGGTAAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATTCATTCTTTGCAACTTATTTTAAGAAATACTTTTAAAGATACAGATCATATGAGTGAGATTCATAGAAAATCAATACAAACAACAATTAATGACCTCAAGATTATTGATGGGAGGCAAGAACTGGAATCAGTAACAAGTGAGATGGTTAGGTTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTAGATGGGCTTGTGAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGACTCTCTGTTCACAAAGCCATTGGCAAGCATTTGCTCACATTAGTGGAGGATTCTTCCGTTGAAATTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGTCAAGAGGAAAAAGGCGTTCAATTCGAGATAAAAACACACAACTCTGACATCGAGTCGGGCTCCATAAGTCTAATAGTAAATGCTTGTGCAAGCAAAGACTTGGATGAAAATGTGGTGGGAGTGTGCTTCGTAGCACAAGACATAACATGTCAAAAGATGGTAATGGGCAAGTTCACAAAACTACAAGGTGATTACAAAGCCATCGTACAAAACCCTAACCCACTAATCCCTCCAATATTTGGGTTAGATGAATTTGGTTGGTGCTCAGAATGGAACTTAGCAATGACAAAGCTAAGTGGATGGTCTCGTGAAGCAGTTCTCAACAAATTGCTTTTAGGAGAAGTTTTTGGAAACTCTTCATCATGTTGTTGCCATCTCAAGAATCAAGAGGCTTTTGTGAATCTTGGGATTGTGTTGAACAATGCAATGAATGGGCAAGATCCTGAAAAGAATATCCCATTTGGTTTCTATGCAAGAAATGGGATATTTGTAGAATGTCTTCTATGTGTTAATAAGATATTGGATAAAGATGGCGGAGTTATTGGGGTTTTTTGCTTCTTGCAACTTGCTAGCCAAGAGCTTCAACAAGCATTGAGTATTCAAAAATTATGTGAGAGAACAGCTTTGAACAGATTGAAGGCATTGGGATATATGAAGAGGCAGATTGAAAATCCTCTTTGTGGGATCATTTTTTCAAGCAAAATGTTGCAGCAAACTCAGTTGGGAGTGGAACAGAAGCAACTTTTGCATAATAGTGTCAATTGTCAAAGGCAGATCTCCAAGGTTCTTGATGAATCTCATGATCTTGATCGGATTATTCAAGGTTTCATTGATTTAGAAATGGTTGAGTTTTCATTGTATGAAGTATTGGTGGTATCAATTTGTCAAGTGATGATGAAGAGCAAAGGGAAAGGTATCCAAATAGCAAATGAGATTGCAGAAGAGATGATGATGATAACATATGTTGGAGGAGGAATACCAGAATCATTGTTGAATGAGATGTTTGGGAATGATTATGAGGATGCAACTGAAGAAGGTTTCAGCTTGTTTATAAGTAGAAAGCTAGTGAAGATGATGAATGGAGATGTGAGATATGTAAGGGAAGCAGACAAGTCAAGCTTCATCATTACTCTTGAGTTTGCTGCTGCTCATAACTTAAGAACATAA | 3276 | 42.67 | MSSAGRPSQSSRNTGRGSSSSSQSRHISRILTQTSIDAKLQSHFEQSGSSFDYSTSIHLTTNLTAAPPSAAAATTTAYLHQIQKSNLIQPFGCLLALHPTTLKLIAFTQNAPEMLTTVAHTVPDGDNHPLLAIGTDLRAIFTNPTATALLKALAFPDVTLLNPILVHSKSSGKPFYAILHRVTGSLIIDFEPLKPDQVPVTAAGALQSYKLAAKAITCLQALPSGSLARLCDTMVQELFELTGYDRVMAYRFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDHNLDFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMAIVVNEEEDEENFNQNNNNNDASLQKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENHILEKNILRTQTLLCDMLMRDAPLGIVSRTPNVMDLVKSDEAALLYDNKVWRLGITPTDFHLQDIASWIFEYHVDSTGLNTDSLYDAGYPGALELGDAVCGMAVVRISSEDMIFWFRSHTASEILWGGAKHEPGDKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDTDHMSEIHRKSIQTTINDLKIIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVHKAIGKHLLTLVEDSSVEIVKKMLFLALQGQEEKGVQFEIKTHNSDIESGSISLIVNACASKDLDENVVGVCFVAQDITCQKMVMGKFTKLQGDYKAIVQNPNPLIPPIFGLDEFGWCSEWNLAMTKLSGWSREAVLNKLLLGEVFGNSSSCCCHLKNQEAFVNLGIVLNNAMNGQDPEKNIPFGFYARNGIFVECLLCVNKILDKDGGVIGVFCFLQLASQELQQALSIQKLCERTALNRLKALGYMKRQIENPLCGIIFSSKMLQQTQLGVEQKQLLHNSVNCQRQISKVLDESHDLDRIIQGFIDLEMVEFSLYEVLVVSICQVMMKSKGKGIQIANEIAEEMMMITYVGGGIPESLLNEMFGNDYEDATEEGFSLFISRKLVKMMNGDVRYVREADKSSFIITLEFAAAHNLRT | 1091 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 22379603 | 22386295 | + | CcPI632755_08g010580.1 | Cco08g1058 | 185532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco08g1058 | 1091 | ProSiteProfiles | PAS repeat profile. | 767 | 819 | IPR000014 | - | |
| Cco08g1058 | 1091 | Pfam | PAS fold | 767 | 891 | IPR013767 | GO:0006355(InterPro) | |
| Cco08g1058 | 1091 | Pfam | PAS fold | 637 | 751 | IPR013767 | GO:0006355(InterPro) | |
| Cco08g1058 | 1091 | Pfam | Phytochrome region | 429 | 603 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cco08g1058 | 1091 | SMART | gaf_1 | 226 | 426 | IPR003018 | GO:0005515(InterPro) | |
| Cco08g1058 | 1091 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 226 | 406 | IPR016132 | - | |
| Cco08g1058 | 1091 | SMART | pas_2 | 766 | 836 | IPR000014 | - | |
| Cco08g1058 | 1091 | SMART | pas_2 | 636 | 702 | IPR000014 | - | |
| Cco08g1058 | 1091 | PRINTS | Phytochrome signature | 656 | 671 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cco08g1058 | 1091 | PRINTS | Phytochrome signature | 326 | 347 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cco08g1058 | 1091 | PRINTS | Phytochrome signature | 241 | 260 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cco08g1058 | 1091 | PRINTS | Phytochrome signature | 749 | 769 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cco08g1058 | 1091 | PRINTS | Phytochrome signature | 531 | 550 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cco08g1058 | 1091 | PRINTS | Phytochrome signature | 729 | 746 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cco08g1058 | 1091 | PRINTS | Phytochrome signature | 141 | 163 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cco08g1058 | 1091 | PRINTS | Phytochrome signature | 446 | 466 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cco08g1058 | 1091 | PRINTS | Phytochrome signature | 637 | 653 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cco08g1058 | 1091 | PRINTS | Phytochrome signature | 564 | 582 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Cco08g1058 | 1091 | FunFam | Phytochrome | 630 | 761 | - | - | |
| Cco08g1058 | 1091 | Gene3D | PAS domain | 629 | 765 | - | - | |
| Cco08g1058 | 1091 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 640 | 747 | IPR035965 | - | |
| Cco08g1058 | 1091 | Gene3D | - | 421 | 594 | IPR043150 | - | |
| Cco08g1058 | 1091 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Cco08g1058 | 1091 | PANTHER | OS08G0260000 PROTEIN | 8 | 1015 | - | - | |
| Cco08g1058 | 1091 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 82 | 196 | IPR035965 | - | |
| Cco08g1058 | 1091 | Coils | Coil | 413 | 433 | - | - | |
| Cco08g1058 | 1091 | ProSiteProfiles | PAS repeat profile. | 634 | 704 | IPR000014 | - | |
| Cco08g1058 | 1091 | SUPERFAMILY | GAF domain-like | 424 | 601 | - | - | |
| Cco08g1058 | 1091 | SUPERFAMILY | GAF domain-like | 206 | 413 | - | - | |
| Cco08g1058 | 1091 | CDD | PAS | 778 | 891 | IPR000014 | - | |
| Cco08g1058 | 1091 | NCBIfam | PAS domain S-box protein | 641 | 757 | IPR000014 | - | |
| Cco08g1058 | 1091 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 326 | 335 | IPR013516 | - | |
| Cco08g1058 | 1091 | FunFam | Phytochrome | 421 | 550 | - | - | |
| Cco08g1058 | 1091 | Pfam | His Kinase A (phospho-acceptor) domain | 916 | 977 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Cco08g1058 | 1091 | Pfam | GAF domain | 227 | 415 | IPR003018 | GO:0005515(InterPro) | |
| Cco08g1058 | 1091 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 781 | 889 | IPR035965 | - | |
| Cco08g1058 | 1091 | CDD | PAS | 645 | 751 | IPR000014 | - | |
| Cco08g1058 | 1091 | Gene3D | - | 207 | 577 | IPR029016 | - | |
| Cco08g1058 | 1091 | Pfam | PAS fold | 77 | 192 | IPR013654 | GO:0006355(InterPro) | |
| Cco08g1058 | 1091 | Gene3D | PAS domain | 81 | 329 | - | - | |
| Cco08g1058 | 1091 | PIRSF | Phytochrome_conventional | 7 | 1027 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
| Cco08g1058 | 1091 | PIRSF | Phytochrome_conventional | 1019 | 1091 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco08g1055 | Cco-Chr8:22338897 | Cco08g1058 | Cco-Chr8:22379603 | 0.00E+00 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco08g1058 | K12120 | - | csv:101219585 | 1800.79 |