Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1058 ATGTCATCAGCAGGTAGACCAAGCCAAAGTTCCAGGAACACGGGAAGAGGATCTTCTTCCTCCTCACAATCAAGACACATCTCCAGAATCCTCACTCAAACCTCCATAGATGCAAAGCTTCAATCCCACTTTGAGCAATCCGGTTCTTCCTTTGACTACTCCACTTCAATCCATCTCACCACCAACCTAACTGCCGCACCACCCTCCGCCGCTGCCGCCACCACCACCGCATACCTCCACCAAATCCAAAAATCCAACCTCATCCAACCCTTTGGCTGCCTTTTGGCCCTCCACCCAACCACCCTCAAACTCATCGCCTTCACCCAAAATGCCCCAGAAATGCTCACCACCGTTGCCCACACCGTCCCCGATGGCGACAACCACCCCCTCCTCGCCATCGGCACGGACCTCCGAGCCATCTTCACCAACCCCACTGCCACCGCCCTCCTCAAGGCCCTCGCCTTCCCCGACGTCACCCTCCTCAACCCCATTCTAGTCCACTCCAAGTCCTCAGGGAAGCCCTTCTACGCCATTCTCCACCGCGTCACCGGTAGCCTTATCATTGACTTCGAGCCCCTCAAACCCGACCAAGTCCCCGTCACCGCTGCAGGAGCTCTCCAATCCTATAAGCTCGCTGCCAAAGCTATCACTTGTCTCCAGGCTCTTCCTAGTGGGAGCCTGGCTAGACTCTGTGACACCATGGTTCAAGAACTCTTTGAGTTGACAGGTTACGATAGAGTTATGGCATATAGGTTTCATGACGATGATCATGGCGAGGTATTTTCCGAGGTTACAAAGCCTGGCCTTGAACCTTATCTAGGTTTGCATTATCCAGCCACTGACATTCCTCAGGCTGCTAGGTTTTTATTCATGAAGAATAAAGTTAGAATGATTGTGGATTGTAGAGCCAAACATGTGAAAGTCATTCAAGATCACAATCTTGATTTTGATTTGACTTTGTGTGGGTCCACTTTAAGAGCTCCTCATAGTTGCCATTTGCAATATATGGAGAATATGGACTCTATTGCCTCTTTGGTTATGGCCATTGTAGTGAATGAAGAGGAGGATGAAGAGAATTTCAATCAAAATAACAACAATAATGATGCTTCTTTGCAAAAACATAAGAGGAAAAGATTGTGGGGTTTGGTAGTTTGTCATAACACAACTCCTAGATTTGTCCCTTTTCCACTTAGATATGCTTGTGAGTTTCTAGCTCAAGTTTTTGCCATTCATGTCAACAAGGAATTGGAGTTAGAGAATCATATTTTGGAGAAAAATATCTTGAGAACTCAAACACTTTTATGTGACATGTTAATGCGTGATGCTCCTTTAGGAATTGTGTCAAGGACTCCTAACGTAATGGATCTTGTCAAATCTGATGAAGCTGCATTATTGTACGATAACAAGGTATGGAGATTAGGGATAACCCCTACTGATTTCCATCTTCAGGACATTGCTTCATGGATTTTTGAGTATCATGTGGATTCCACTGGTTTGAATACTGATAGCTTGTATGATGCCGGGTACCCGGGCGCACTTGAGCTAGGCGATGCAGTGTGCGGGATGGCTGTTGTGAGGATATCTTCGGAGGACATGATTTTCTGGTTTCGATCGCACACCGCATCGGAGATTCTGTGGGGCGGGGCAAAGCATGAGCCTGGTGACAAGGATGATGGAAGGAAAATGCATCCAAGATCATCTTTTAAGGCTTTTCTTGAAGTGGTAAAGACAAGGAGTTTGCCTTGGAAGGACTTTGAAATGGATGCAATTCATTCTTTGCAACTTATTTTAAGAAATACTTTTAAAGATACAGATCATATGAGTGAGATTCATAGAAAATCAATACAAACAACAATTAATGACCTCAAGATTATTGATGGGAGGCAAGAACTGGAATCAGTAACAAGTGAGATGGTTAGGTTGATTGAAACAGCCACAGTTCCAATTTTGGCTGTTGATGTAGATGGGCTTGTGAATGGGTGGAACTCAAAAATTGCTGAATTGACTGGACTCTCTGTTCACAAAGCCATTGGCAAGCATTTGCTCACATTAGTGGAGGATTCTTCCGTTGAAATTGTCAAGAAGATGTTGTTCTTGGCATTGCAAGGTCAAGAGGAAAAAGGCGTTCAATTCGAGATAAAAACACACAACTCTGACATCGAGTCGGGCTCCATAAGTCTAATAGTAAATGCTTGTGCAAGCAAAGACTTGGATGAAAATGTGGTGGGAGTGTGCTTCGTAGCACAAGACATAACATGTCAAAAGATGGTAATGGGCAAGTTCACAAAACTACAAGGTGATTACAAAGCCATCGTACAAAACCCTAACCCACTAATCCCTCCAATATTTGGGTTAGATGAATTTGGTTGGTGCTCAGAATGGAACTTAGCAATGACAAAGCTAAGTGGATGGTCTCGTGAAGCAGTTCTCAACAAATTGCTTTTAGGAGAAGTTTTTGGAAACTCTTCATCATGTTGTTGCCATCTCAAGAATCAAGAGGCTTTTGTGAATCTTGGGATTGTGTTGAACAATGCAATGAATGGGCAAGATCCTGAAAAGAATATCCCATTTGGTTTCTATGCAAGAAATGGGATATTTGTAGAATGTCTTCTATGTGTTAATAAGATATTGGATAAAGATGGCGGAGTTATTGGGGTTTTTTGCTTCTTGCAACTTGCTAGCCAAGAGCTTCAACAAGCATTGAGTATTCAAAAATTATGTGAGAGAACAGCTTTGAACAGATTGAAGGCATTGGGATATATGAAGAGGCAGATTGAAAATCCTCTTTGTGGGATCATTTTTTCAAGCAAAATGTTGCAGCAAACTCAGTTGGGAGTGGAACAGAAGCAACTTTTGCATAATAGTGTCAATTGTCAAAGGCAGATCTCCAAGGTTCTTGATGAATCTCATGATCTTGATCGGATTATTCAAGGTTTCATTGATTTAGAAATGGTTGAGTTTTCATTGTATGAAGTATTGGTGGTATCAATTTGTCAAGTGATGATGAAGAGCAAAGGGAAAGGTATCCAAATAGCAAATGAGATTGCAGAAGAGATGATGATGATAACATATGTTGGAGGAGGAATACCAGAATCATTGTTGAATGAGATGTTTGGGAATGATTATGAGGATGCAACTGAAGAAGGTTTCAGCTTGTTTATAAGTAGAAAGCTAGTGAAGATGATGAATGGAGATGTGAGATATGTAAGGGAAGCAGACAAGTCAAGCTTCATCATTACTCTTGAGTTTGCTGCTGCTCATAACTTAAGAACATAA 3276 42.67 MSSAGRPSQSSRNTGRGSSSSSQSRHISRILTQTSIDAKLQSHFEQSGSSFDYSTSIHLTTNLTAAPPSAAAATTTAYLHQIQKSNLIQPFGCLLALHPTTLKLIAFTQNAPEMLTTVAHTVPDGDNHPLLAIGTDLRAIFTNPTATALLKALAFPDVTLLNPILVHSKSSGKPFYAILHRVTGSLIIDFEPLKPDQVPVTAAGALQSYKLAAKAITCLQALPSGSLARLCDTMVQELFELTGYDRVMAYRFHDDDHGEVFSEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVIQDHNLDFDLTLCGSTLRAPHSCHLQYMENMDSIASLVMAIVVNEEEDEENFNQNNNNNDASLQKHKRKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENHILEKNILRTQTLLCDMLMRDAPLGIVSRTPNVMDLVKSDEAALLYDNKVWRLGITPTDFHLQDIASWIFEYHVDSTGLNTDSLYDAGYPGALELGDAVCGMAVVRISSEDMIFWFRSHTASEILWGGAKHEPGDKDDGRKMHPRSSFKAFLEVVKTRSLPWKDFEMDAIHSLQLILRNTFKDTDHMSEIHRKSIQTTINDLKIIDGRQELESVTSEMVRLIETATVPILAVDVDGLVNGWNSKIAELTGLSVHKAIGKHLLTLVEDSSVEIVKKMLFLALQGQEEKGVQFEIKTHNSDIESGSISLIVNACASKDLDENVVGVCFVAQDITCQKMVMGKFTKLQGDYKAIVQNPNPLIPPIFGLDEFGWCSEWNLAMTKLSGWSREAVLNKLLLGEVFGNSSSCCCHLKNQEAFVNLGIVLNNAMNGQDPEKNIPFGFYARNGIFVECLLCVNKILDKDGGVIGVFCFLQLASQELQQALSIQKLCERTALNRLKALGYMKRQIENPLCGIIFSSKMLQQTQLGVEQKQLLHNSVNCQRQISKVLDESHDLDRIIQGFIDLEMVEFSLYEVLVVSICQVMMKSKGKGIQIANEIAEEMMMITYVGGGIPESLLNEMFGNDYEDATEEGFSLFISRKLVKMMNGDVRYVREADKSSFIITLEFAAAHNLRT 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22379603 22386295 + CcPI632755_08g010580.1 Cco08g1058 185532

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1058 1091 ProSiteProfiles PAS repeat profile. 767 819 IPR000014 -
Cco08g1058 1091 Pfam PAS fold 767 891 IPR013767 GO:0006355(InterPro)
Cco08g1058 1091 Pfam PAS fold 637 751 IPR013767 GO:0006355(InterPro)
Cco08g1058 1091 Pfam Phytochrome region 429 603 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1058 1091 SMART gaf_1 226 426 IPR003018 GO:0005515(InterPro)
Cco08g1058 1091 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 406 IPR016132 -
Cco08g1058 1091 SMART pas_2 766 836 IPR000014 -
Cco08g1058 1091 SMART pas_2 636 702 IPR000014 -
Cco08g1058 1091 PRINTS Phytochrome signature 656 671 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1058 1091 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1058 1091 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1058 1091 PRINTS Phytochrome signature 749 769 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1058 1091 PRINTS Phytochrome signature 531 550 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1058 1091 PRINTS Phytochrome signature 729 746 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1058 1091 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1058 1091 PRINTS Phytochrome signature 446 466 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1058 1091 PRINTS Phytochrome signature 637 653 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1058 1091 PRINTS Phytochrome signature 564 582 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Cco08g1058 1091 FunFam Phytochrome 630 761 - -
Cco08g1058 1091 Gene3D PAS domain 629 765 - -
Cco08g1058 1091 SUPERFAMILY PYP-like sensor domain (PAS domain) 640 747 IPR035965 -
Cco08g1058 1091 Gene3D - 421 594 IPR043150 -
Cco08g1058 1091 MobiDBLite consensus disorder prediction 1 26 - -
Cco08g1058 1091 PANTHER OS08G0260000 PROTEIN 8 1015 - -
Cco08g1058 1091 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 196 IPR035965 -
Cco08g1058 1091 Coils Coil 413 433 - -
Cco08g1058 1091 ProSiteProfiles PAS repeat profile. 634 704 IPR000014 -
Cco08g1058 1091 SUPERFAMILY GAF domain-like 424 601 - -
Cco08g1058 1091 SUPERFAMILY GAF domain-like 206 413 - -
Cco08g1058 1091 CDD PAS 778 891 IPR000014 -
Cco08g1058 1091 NCBIfam PAS domain S-box protein 641 757 IPR000014 -
Cco08g1058 1091 ProSitePatterns Phytochrome chromophore attachment site signature. 326 335 IPR013516 -
Cco08g1058 1091 FunFam Phytochrome 421 550 - -
Cco08g1058 1091 Pfam His Kinase A (phospho-acceptor) domain 916 977 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco08g1058 1091 Pfam GAF domain 227 415 IPR003018 GO:0005515(InterPro)
Cco08g1058 1091 SUPERFAMILY PYP-like sensor domain (PAS domain) 781 889 IPR035965 -
Cco08g1058 1091 CDD PAS 645 751 IPR000014 -
Cco08g1058 1091 Gene3D - 207 577 IPR029016 -
Cco08g1058 1091 Pfam PAS fold 77 192 IPR013654 GO:0006355(InterPro)
Cco08g1058 1091 Gene3D PAS domain 81 329 - -
Cco08g1058 1091 PIRSF Phytochrome_conventional 7 1027 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Cco08g1058 1091 PIRSF Phytochrome_conventional 1019 1091 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1058 K12120 - - csv:101219585 1800.79
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1055 Cco-Chr8:22338897 Cco08g1058 Cco-Chr8:22379603 0.00E+00 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g0065 . 5 1211 Histidine Kinase Gene Family AT2G17820 64.3 0.0e+00 1445.6
Cco11g0125 . 20 1004 Histidine Kinase Gene Family AT2G01830 71.6 0.0e+00 1343.9
Cco01g0703 . 24 966 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1296.2
Cco02g0290 . 279 1231 Histidine Kinase Gene Family AT2G01830 54.0 6.1e-278 954.1
Cco06g0219 . 96 1022 Histidine Kinase Gene Family AT2G01830 53.8 7.5e-268 920.6
Cco02g1037 . 304 1252 Histidine Kinase Gene Family AT2G01830 51.8 1.4e-266 916.4
Cco05g1829 . 1 1010 Histidine Kinase Gene Family AT5G10720 56.4 1.0e-289 993.0
Cco08g1055 . 150 1269 Histidine Kinase Gene Family AT1G09570 80.3 0.0e+00 1836.2
Cco08g1058 . 3 1087 Histidine Kinase Gene Family AT1G09570 67.8 0.0e+00 1519.2
Cco02g0306 . 18 1112 Histidine Kinase Gene Family AT1G09570 54.9 0.0e+00 1206.8
Cco05g0775 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1193.3
Cco05g0775 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.9 0.0e+00 1670.2
Cco03g0733 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.9 0.0e+00 1245.3
Cco08g1055 . 170 1203 Histidine Kinase Gene Family AT2G18790 53.6 0.0e+00 1092.8
Cco02g0306 . 26 1069 Histidine Kinase Gene Family AT2G18790 52.3 0.0e+00 1080.1
Cco08g1058 . 22 1026 Histidine Kinase Gene Family AT2G18790 51.0 2.6e-295 1011.9
Cco02g0306 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.7 0.0e+00 1365.9
Cco05g0775 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.7 0.0e+00 1145.2
Cco08g1055 . 158 1263 Histidine Kinase Gene Family AT5G35840 51.9 0.0e+00 1117.4
Cco05g0775 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.9 0.0e+00 1709.9
Cco03g0733 . 32 1094 Histidine Kinase Gene Family AT4G16250 59.4 0.0e+00 1267.3
Cco08g1055 . 157 1264 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1137.1
Cco02g0306 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.8 0.0e+00 1119.8
Cco03g0733 . 15 1094 Histidine Kinase Gene Family AT4G18130 63.4 0.0e+00 1347.0
Cco05g0775 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.5 0.0e+00 1263.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56