Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1071 ATGGCTTATCAGCATGGCCCGGGTCCTAGTTCGATATCTGGATCAAGTTCGAGTTCTGGTTTCTTGAACTCTCCCTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCTTGGGAGACTCAGAGCGAGACTATGAGGCGATACTTTGAGCAGTTTGGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTCGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGCGCAGACCCTACTCCGCTTATTGATGGCAGGCGAGCAAATTGTAATCTGGCTTCACTTGGCCGACCTCGTCCACCTATATCTTATGGACGTTTAAGACAGCCTGCAGTGTATGTTGGAGGCATGCAACCCAACAGGGGAGCTTATATTGGAAATTTTGGATATCAACAACCGGTTTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGTTATGCGACGTATGGACCTGAGTATGTCTACCCGCAGGGTGGATACAACCCTTTTGTGGGTCAGCAATACCTGCAGATTTATGGGGTGCCTGGGTCAGCGAACCCTACTATTTATCATTATGGACAATTAGGTCAAACAGTCCCTGGTGGTCATGGGTATGGAGCAGTACATGGATATGCAATGCCAAGCCCTCAGATCCTGCAGTTTAGTGGTCCTAATGTCAATGCATTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTTGTACAAGGTATCGATAGATTGCAGCAGGACTTAGAGCAGCGGAACTGCTACTTGAGTGGCGGGCTTCGGATCTAG 894 47.87 MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPESARRACADPTPLIDGRRANCNLASLGRPRPPISYGRLRQPAVYVGGMQPNRGAYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSANPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGIDRLQQDLEQRNCYLSGGLRI 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22519645 22522898 + CcPI632755_08g010710.1 Cco08g1071 185545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1071 297 SUPERFAMILY RNA-binding domain, RBD 31 145 IPR035979 GO:0003676(InterPro)
Cco08g1071 297 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723(InterPro)
Cco08g1071 297 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 26 113 - -
Cco08g1071 297 SMART rrm1_1 33 105 IPR000504 GO:0003723(InterPro)
Cco08g1071 297 CDD RRM_RBM24_RBM38_like 32 107 - -
Cco08g1071 297 PANTHER BOULE-RELATED 19 274 - -
Cco08g1071 297 Gene3D - 9 122 IPR012677 -
Cco08g1071 297 Pfam RNA recognition motif 34 90 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1071 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1500 Cco-Chr2:27569836 Cco08g1071 Cco-Chr8:22519645 1.90E-34 dispersed
Cco08g0251 Cco-Chr8:4456243 Cco08g1071 Cco-Chr8:22519645 1.20E-44 dispersed
Cco08g1071 Cco-Chr8:22519645 Cco08g1268 Cco-Chr8:24471045 6.10E-42 dispersed
Cco08g1071 Cco-Chr8:22519645 Cco11g1466 Cco-Chr11:27495752 3.20E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g44 . . . . . . . . Cmo05g00978 Cmo12g00631 . . . Car12g00668 . . Cpe07g00603 . . . . . . . Cla08g00924 Cam08g1369 Cec08g0952 Cco08g1071 Clacu08g1077 . Cre08g0861 . . . . . . . Cme03g01324 Blo17g00909 Blo18g00730 . Bda01g01575 Bpe02g01768 . Bma01g00691 . . . . Cma12g00695 Cma05g00958 Car05g00841 . Cpe11g00771 . . . . . . . . . . . . . . . Lsi08g00767 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006014 1 0 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 39