Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1074 ATGTCGGGATCTGAAACTGGTGTGATCACCAGTAGAGAACCCTTCAGCGTCGGCGTTCAAAATAGCTCCTTACAGTCGCAGTCGGCGGCCCAAAATATGCGATTAGCCTTCAGCGCCGATGGCCCAGCCGTCTACAAGCCTGTGACTCCTTCAACCTCACCGTCGTACCAATCCTCCATGGCCGGAGTTTCTGGTAACGCCGGAATTGAAGGATCGGCTGGTGGAGGAGGGTCTATGTTGCCTCATGGTTTCAACATAAATTCAGTGGGCAATGAGCAGATAAAGAGGAAGAGGGGCAGGCCAAGGAAGTATGGACCAGATGGCTCCATGGCTTTAGCTTTGGGTTCTGGGCCGCCATCAGGAAGTGGAGGTTTTCCTCCTTCAAATATGGCTAATTCTGCTTCTGAAAGATTGGGGTCACCAAATTCACTGAAGAAAACTAAAGGCAGGCCACCTGGTTCTAAGAAAAAGCAACAATTGGAAGCTTTAGGATCGGCTGGTATTGGATTCACTCCACATGTTATTGATGTGAAAGCTGGAGAGGATGTATCGTCAAAAATAATGTCCTTTTCTCAGAATGGCCCCAGAGCTATATGTATTCTGTCTGCAAATGGAGCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGTACTGTTACTTATGAGGGGCCGTTTGAAATTTTGTCACTTTCGGGTTCATTTCTCCTTTCTGAAAATGGTGGTCAGAGAAGCAGAACCGGTGGGTTAAGCGTGTCTTTGTCCGGTCCAGATGGCCGAGTTTTAGGCGGTGGTGTGGCGGGTCTTCTCACAGCATTATCTCCTGTTCAGGTGGTCGTGGGAAGTTTCATAGCCGACAGCAACAAGGAACCGAAGTCAGTGCGCCAAAATGAACCCATCACTGTCTCACCAATGCTAAACCCAGTTGGCTTCGGTCACTTGACAGGAGGAGCCAGTAGTCCATCTCATGGGACACTGAGCGAGTCTTCTGGTGGCAGCCCCCTCAACAACAGCTCTGGAGCCTGTAACAACACCAACCATCCACAGGGCATGTCCGGCATGCCATGGAATTGCTTGCGAATTGTCCACACCAGACCAGATGAGAAATTCTCCATAAAATTCTTTCTCAATTTCCTATTCATCTCTCCGCCAGCAGCTTCAGATTTTTTTCATATTGCTGGACTTGGTCGAATCAACAAATCCGTATTCTCCTGTTTCGTTTCACTGCTTCGGTGTTTTGTAAAGGGGAAAGGAAAAAGGATTAGGCATTGGGAAATAGTCATGGCTGTTCTTCCATTGGGAATACGCAGCAGGTGA 1323 48.22 MSGSETGVITSREPFSVGVQNSSLQSQSAAQNMRLAFSADGPAVYKPVTPSTSPSYQSSMAGVSGNAGIEGSAGGGGSMLPHGFNINSVGNEQIKRKRGRPRKYGPDGSMALALGSGPPSGSGGFPPSNMANSASERLGSPNSLKKTKGRPPGSKKKQQLEALGSAGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRAICILSANGAISNVTLRQPATSGGTVTYEGPFEILSLSGSFLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTALSPVQVVVGSFIADSNKEPKSVRQNEPITVSPMLNPVGFGHLTGGASSPSHGTLSESSGGSPLNNSSGACNNTNHPQGMSGMPWNCLRIVHTRPDEKFSIKFFLNFLFISPPAASDFFHIAGLGRINKSVFSCFVSLLRCFVKGKGKRIRHWEIVMAVLPLGIRSR 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22542348 22551498 + CcPI632755_08g010740.1 Cco08g1074 185548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1074 440 FunFam AT-hook motif nuclear-localized protein 1-like 172 302 - -
Cco08g1074 440 SUPERFAMILY AF0104/ALDC/Ptd012-like 170 287 - -
Cco08g1074 440 MobiDBLite consensus disorder prediction 72 159 - -
Cco08g1074 440 MobiDBLite consensus disorder prediction 122 142 - -
Cco08g1074 440 Pfam Plants and Prokaryotes Conserved (PCC) domain 172 286 IPR005175 -
Cco08g1074 440 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 26 335 IPR039605 GO:0003680(InterPro)
Cco08g1074 440 MobiDBLite consensus disorder prediction 320 349 - -
Cco08g1074 440 MobiDBLite consensus disorder prediction 1 23 - -
Cco08g1074 440 MobiDBLite consensus disorder prediction 315 349 - -
Cco08g1074 440 CDD DUF296 171 285 IPR005175 -
Cco08g1074 440 ProSiteProfiles PPC domain profile profile. 166 306 IPR005175 -
Cco08g1074 440 Gene3D - 172 307 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0286 Cco-Chr1:2755950 Cco08g1074 Cco-Chr8:22542348 5.00E-52 dispersed
Cco02g1819 Cco-Chr2:31083734 Cco08g1074 Cco-Chr8:22542348 1.50E-39 dispersed
Cco08g1074 Cco-Chr8:22542348 Cco11g1956 Cco-Chr11:32080088 4.00E-90 dispersed
Cco08g1074 Cco-Chr8:22542348 Cco10g0178 Cco-Chr10:1723080 3.90E-61 transposed
Cco08g1074 Cco-Chr8:22542348 Cco06g0387 Cco-Chr6:4285278 3.90E-61 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1074 - - - 0.0