Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1081 ATGGGTGGCGGTGGCGGTAGCAGCGGTGTTGTGCCAAGTAGGGAGTTAGATCAAACTCCGACATGGGCCGTTGCCTCTGTCTGTGCAATCATCATTCTTATTTCCATTATATTGGAAAAGGTTCTTCACATGGTTGGAGAGCTATTCCAAAAAAGGAAAAAGAAAGCATTGTATGAAGCGCTTGAGAAAGTTAAAGGCGAGCTTATGGTTTTAGGATTCATTTCTTTGCTCTTAACATTCGGACAAAATTATATTGCTAAAGTTTGCATACCCTCAAAATATGCAAATACTATGTTGCCTTGCCCTTATAGAGGGACTCTACCTAAAAGCTCCCATGGCCTCGAGCCCCAAGATCACGGCGAAGAGACTACAGATCATCACCGTAGGCTTCTTTGGTACGAGCATCGACGTCGTCTTGGTGGCGGTGCTTCCGTAGAAAGTTGCAAATCAGGGTATACACAACTTATATCTTTAAATGGTTTGCATCAAATACATATCTTCATCTTCTTTCTAGCCGTCCTACATGTTGTATTTAGCGGCATAACCATGACTCTTGGAAGATTGAAAATTCGTGGGTGGAAGGTTTGGGAAAAACAGACTGAACAAGAACATGACGCCATGAACGATCCTACAAGGTTCAGACTTACTCACGAGACTTCCTTTGTTAGAGATCACAGCAGTTTTTGGACCAAAACACCCCTCTCCTTTTACTTTGTATGCTTTTGGAGGCAATTCTTGAGGTCCGTTAGTAGGGCAGATTACTTGTCTCTTAGACATGGTTTTGTCACTGTTCATTTAGCCCCCGGGAGTAAATTTGACTTTCAAAAGTACATCAAAAGATCATTAGAAGATGACTTTAAGGTGGTCGTGGGAATCAGTCCTCTACTATGGGCATCAATGGTGCTTTTTCTACTTCTCAATGTTAGTGCCGTTGGAACGAAGCTGCAAGGAATTATAACACAAATGGCTCTTGAAATCAAGGAAAGGCATGCAGTGGTTCAAGGGATTCCCCTCGTCCAAGTCTCCGATAGACACTTTTGGTTTAGTTGGCCAGTTTTGGTTCTTTATCTCATCCATTATGTCCTCTTCCAGTATGAATTTGGGTTGAGATCATGTTTTCACGACAATTTTGATCTTATTATCATCAGAGTTGCCCTTGGGGTTGGAGTCCAAATTTTGTGCAGCTACATTACACTTCCATTATATGCACTTGTTACTCAGATGGGATCAACAATGAAGAAATCCATATTTGATGAACAAACTTCAAAAGCATTAAAGCAATGGCATAGAAGTGCTTTGAAGAAAAAGAACGAAGGGGGAAAGCCCGATTCAACGCCGATGCGAACTTTAGGCGGCGGCGGCGGCGGGGGAAGCCCCCCCGAGTCACCGACGCAATCCCCGCGTGAATTCCAACATCAATTGGTCTCTCAACCGTTGCCAACCGACGTCGAAGCCTCCACCATTCCTTCAGCCAACATAATGACCACCGTTGATCTCCATCAACATCAGCAAAACTATACCAATCGTGACTTGTTGAGCTGA 1542 43.58 MGGGGGSSGVVPSRELDQTPTWAVASVCAIIILISIILEKVLHMVGELFQKRKKKALYEALEKVKGELMVLGFISLLLTFGQNYIAKVCIPSKYANTMLPCPYRGTLPKSSHGLEPQDHGEETTDHHRRLLWYEHRRRLGGGASVESCKSGYTQLISLNGLHQIHIFIFFLAVLHVVFSGITMTLGRLKIRGWKVWEKQTEQEHDAMNDPTRFRLTHETSFVRDHSSFWTKTPLSFYFVCFWRQFLRSVSRADYLSLRHGFVTVHLAPGSKFDFQKYIKRSLEDDFKVVVGISPLLWASMVLFLLLNVSAVGTKLQGIITQMALEIKERHAVVQGIPLVQVSDRHFWFSWPVLVLYLIHYVLFQYEFGLRSCFHDNFDLIIIRVALGVGVQILCSYITLPLYALVTQMGSTMKKSIFDEQTSKALKQWHRSALKKKNEGGKPDSTPMRTLGGGGGGGSPPESPTQSPREFQHQLVSQPLPTDVEASTIPSANIMTTVDLHQHQQNYTNRDLLS 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22604995 22612196 - CcPI632755_08g010810.1 Cco08g1081 185555

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1081 513 PANTHER MLO-LIKE PROTEIN 1 13 476 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Cco08g1081 513 Pfam Mlo family 14 447 IPR004326 GO:0006952(InterPro)|GO:0016020(InterPro)
Cco08g1081 513 MobiDBLite consensus disorder prediction 459 487 - -
Cco08g1081 513 MobiDBLite consensus disorder prediction 428 487 - -
Cco08g1081 513 MobiDBLite consensus disorder prediction 428 442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1081 K08472 - - csv:101208890 875.93
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1876 Cco-Chr4:33377143 Cco08g1081 Cco-Chr8:22604995 5.60E-161 dispersed
Cco08g1081 Cco-Chr8:22604995 Cco10g0012 Cco-Chr10:197771 2.70E-146 dispersed
Cco08g1081 Cco-Chr8:22604995 Cco09g2082 Cco-Chr9:35230327 3.20E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g64 . . . . . . . . Cmo05g00988 . . . . . . . . . . . . . . . Cla08g00934 Cam08g1381 Cec08g0962 Cco08g1081 Clacu08g1088 . Cre08g0871 Cone4ag2032 . . . . . . . . Blo18g00738 . Bda01g01568 Bpe02g01762 Bpe05g00178 Bma01g00695 . . . . . . Car05g00852 . Cpe11g00780 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g2082 . 3 553 MLO family AT5G53760 69.6 3.8e-218 754.6
Cco11g1866 . 5 530 MLO family AT5G53760 67.4 4.0e-207 718.0
Cco05g1118 . 7 466 MLO family AT5G53760 51.3 3.1e-127 452.6
Cco09g2082 . 3 553 MLO family AT1G26700 68.3 1.8e-212 735.7
Cco11g1866 . 1 511 MLO family AT1G26700 66.7 4.1e-201 698.0
Cco03g0237 . 8 536 MLO family AT2G39200 63.9 2.1e-192 669.1
Cco05g2351 . 7 499 MLO family AT2G39200 67.7 1.4e-191 666.4
Cco02g2253 . 8 505 MLO family AT2G39200 67.1 1.5e-190 662.9
Cco02g2253 . 1 416 MLO family AT1G61560 65.9 7.7e-160 560.5
Cco03g0237 . 1 416 MLO family AT1G61560 66.3 4.7e-157 551.2
Cco05g2351 . 7 408 MLO family AT1G61560 65.2 1.6e-152 536.2
Cco04g1876 . 28 422 MLO family AT1G61560 52.2 2.0e-115 412.9
Cco04g1876 . 18 490 MLO family AT2G17430 63.4 1.8e-172 602.8
Cco10g0012 . 29 490 MLO family AT2G17430 63.4 1.6e-160 563.1
Cco08g1081 . 4 451 MLO family AT2G17430 54.4 3.1e-132 469.2
Cco04g1876 . 7 567 MLO family AT2G17480 63.4 1.1e-196 683.3
Cco10g0012 . 5 574 MLO family AT2G17480 58.6 4.5e-177 618.2
Cco08g1081 . 11 436 MLO family AT2G17480 59.5 4.7e-142 501.9
Cco02g2253 . 8 463 MLO family AT2G17480 50.3 3.3e-124 442.6
Cco08g1081 . 1 366 MLO family AT1G42560 59.6 8.7e-126 447.2
Cco04g1876 . 28 386 MLO family AT1G42560 58.7 1.4e-120 429.9
Cco10g0012 . 29 388 MLO family AT1G42560 56.5 2.1e-111 399.4
Cco06g0054 . 6 419 MLO family AT4G24250 54.2 6.0e-117 417.9
Cco02g0029 . 43 329 MLO family AT4G24250 51.8 3.8e-79 292.4
Cco04g1876 . 8 387 MLO family AT5G65970 66.8 8.1e-145 510.8
Cco10g0012 . 28 388 MLO family AT5G65970 66.2 4.0e-136 481.9
Cco08g1081 . 7 364 MLO family AT5G65970 56.9 2.5e-114 409.5
Cco02g2253 . 2 381 MLO family AT5G65970 51.8 7.4e-106 381.3
Cco03g0237 . 2 381 MLO family AT5G65970 50.7 1.4e-101 367.1
Cco08g1081 . 2 513 MLO family AT2G33670 57.6 1.2e-159 560.1
Cco04g1876 . 28 470 MLO family AT2G33670 62.3 6.7e-158 554.3
Cco10g0012 . 29 471 MLO family AT2G33670 58.7 9.7e-141 497.3
Cco05g2351 . 64 525 MLO family AT1G11310 63.9 1.7e-169 592.8
Cco03g0237 . 63 506 MLO family AT1G11310 64.9 7.5e-165 577.4
Cco02g2253 . 63 520 MLO family AT1G11310 62.7 9.2e-163 570.5
Cco06g0054 . 5 501 MLO family AT2G44110 59.5 1.9e-165 579.3
Cco06g0054 . 1 508 MLO family AT4G02600 72.7 2.6e-213 738.4
Cco05g1118 . 3 560 MLO family AT1G11000 67.3 9.8e-214 740.0
Cco10g0068 . 1 495 MLO family AT1G11000 51.5 1.0e-130 464.2
Cco06g0054 . 1 508 MLO family AT4G02600 72.7 2.6e-213 738.4
Cco05g2351 . 64 525 MLO family AT1G11310 63.9 1.7e-169 592.8
Cco03g0237 . 63 506 MLO family AT1G11310 64.9 7.5e-165 577.4
Cco02g2253 . 63 520 MLO family AT1G11310 62.7 9.2e-163 570.5
Cco05g1118 . 3 560 MLO family AT1G11000 67.3 9.8e-214 740.0
Cco10g0068 . 1 495 MLO family AT1G11000 51.5 1.0e-130 464.2
Cco08g1081 . 2 513 MLO family AT2G33670 57.6 1.2e-159 560.1
Cco04g1876 . 28 470 MLO family AT2G33670 62.3 6.7e-158 554.3
Cco10g0012 . 29 471 MLO family AT2G33670 58.7 9.7e-141 497.3
Cco02g2253 . 1 416 MLO family AT1G61560 65.9 7.7e-160 560.5
Cco03g0237 . 1 416 MLO family AT1G61560 66.3 4.7e-157 551.2
Cco05g2351 . 7 408 MLO family AT1G61560 65.2 1.6e-152 536.2
Cco04g1876 . 28 422 MLO family AT1G61560 52.2 2.0e-115 412.9
Cco04g1876 . 18 490 MLO family AT2G17430 63.4 1.8e-172 602.8
Cco10g0012 . 29 490 MLO family AT2G17430 63.4 1.6e-160 563.1
Cco08g1081 . 4 451 MLO family AT2G17430 54.4 3.1e-132 469.2
Cco04g1876 . 7 567 MLO family AT2G17480 63.4 1.1e-196 683.3
Cco10g0012 . 5 574 MLO family AT2G17480 58.6 4.5e-177 618.2
Cco08g1081 . 11 436 MLO family AT2G17480 59.5 4.7e-142 501.9
Cco02g2253 . 8 463 MLO family AT2G17480 50.3 3.3e-124 442.6
Cco08g1081 . 1 366 MLO family AT1G42560 59.6 8.7e-126 447.2
Cco04g1876 . 28 386 MLO family AT1G42560 58.7 1.4e-120 429.9
Cco10g0012 . 29 388 MLO family AT1G42560 56.5 2.1e-111 399.4
Cco04g1876 . 8 387 MLO family AT5G65970 66.8 8.1e-145 510.8
Cco10g0012 . 28 388 MLO family AT5G65970 66.2 4.0e-136 481.9
Cco08g1081 . 7 364 MLO family AT5G65970 56.9 2.5e-114 409.5
Cco02g2253 . 2 381 MLO family AT5G65970 51.8 7.4e-106 381.3
Cco03g0237 . 2 381 MLO family AT5G65970 50.7 1.4e-101 367.1
Cco09g2082 . 3 553 MLO family AT5G53760 69.6 3.8e-218 754.6
Cco11g1866 . 5 530 MLO family AT5G53760 67.4 4.0e-207 718.0
Cco05g1118 . 7 466 MLO family AT5G53760 51.3 3.1e-127 452.6
Cco03g0237 . 8 536 MLO family AT2G39200 63.9 2.1e-192 669.1
Cco05g2351 . 7 499 MLO family AT2G39200 67.7 1.4e-191 666.4
Cco02g2253 . 8 505 MLO family AT2G39200 67.1 1.5e-190 662.9
Cco06g0054 . 6 419 MLO family AT4G24250 54.2 6.0e-117 417.9
Cco02g0029 . 43 329 MLO family AT4G24250 51.8 3.8e-79 292.4
Cco09g2082 . 3 553 MLO family AT1G26700 68.3 1.8e-212 735.7
Cco11g1866 . 1 511 MLO family AT1G26700 66.7 4.1e-201 698.0
Cco06g0054 . 5 501 MLO family AT2G44110 59.5 1.9e-165 579.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000765 3 4 3 4 2 3 4 3 3 3 2 3 4 3 3 4 2 3 4 3 3 3 3 3 3 3 2 6 2 2 93