Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1082 ATGTTATCCAATACGCCAGCTGAATTGGAATACCTTCATCAAGATTTTGAGGCTTTGAGCATGTCAAAACGGCTCATGAGAAGCATGAGTCAGAAATTGAGGAGGAAGAATAACAAAAGTGTTGCTGAGGAAGAGGACATTTCAAGGGGAATATCTTTGAGATGTCTTACATTATATGGTAGAGGTGGAGGTTGCAAAGTGGGTGCTGACACTGGTGAGGAAATTGGTGACCCAGGTAGTAGAAGAAGGTCCAGTGCTAGTGAGGAAGGTAAGGGATACAAATCATTATTCGGTACTGAAGAAAATAGTGTGGATTGCTTCTCATATGGTGTAAAGGAAAGATTTCGTAAGAAACAAAGCCCAAAGCATTCTGAACTTCGGGACTCTACAAGGAACAGTGACGTCCATATTTTTCTTCCTGATGACATTCTGGAAATGTGCTTGATGAGGCTTCCCATTACGAGTCTTATGAATGCTCGCCTTGTATGCAAAAAGTGGAGATATCTAACTAGCACTCGTCGGTTTTTACAAATGAGACGGGAATGTTTATATCAGACTCCATGGATATTTTTATTTGGTGCAGTTAAAGAGGGCTATTGCTCCGGCGAGATACATGCACTGGATGTATCTCTAAAGCAATGGCATAGAATAGATGCTGATATTCTCAAGGGAAGATTTATGTTCTCCATAGCCAGTATCCATGATGATATATATATCATTGGTGGATGTTCTAGCTTGACCAACTTTGGGAAAGTAGATAAGAGCTCCTTCAGGACACATAAAGGGGTCTTAGTGTTTAGTCCTTTAACTAAATCTTGGCGCAAAATTGCGTCTATGAAGTATGCCAGATCAATGCCTATATTGGGAACTTCTGAGGTCAACTCAGAGTTTTCAGTAGTTCAGAGCCATCATAATCGGCAAGATAGACGTTATTTGAGATCACGTGCCGGTGGTTCATTGGATGTTTATGAGGATCCTCACAGGCTCTCGCTAAGACGTCAAGTCAGAAATCCTGTGGAAGACAACGACATTTCAATGTTGTCTAATAGGAAGTCATACAAGTTCATTCGACAAAAGAGTGATCAGTCTCGTGCAAAAGGACACCGTAGGTTTGTGATTATTGCTATAGGGGGTCTAGGATCTTGGGATGAGCCGATTGATTCAGGAGAGATTTATGATTCCTTATCAAATAAATGGACAGAAATTCAGAGGCTCCCGGCAGATTTCGGTATTATATGTTCTGGAGTTGTCTGCAATGGGATCTTCTATGTTTATTCTGAGACAGACAGACTTGCAGGTTATGACATCGAAAGAGGCTTTTGGATTGGGATCCAAACATCTCCATTCCCGCCGCGTGTTCATGAGTACTACCCCAAACTCGTATCCTCTAATGGTCGGCTATTCATGCTTTCTGTCTCCTGGTGTGAAGGGGATGGTCAAATAGGGCAGAGAAACAAGGCTGTGAGGAAACTGTGGGAGTTAGATCTCACGTACCTTGCCTGGACGGAGGTATCCGTGCATCCCGATGCACCAATGGACTGGAATGCTGCATTTGTTGCTGATAGGAACCTTATATTTGGAATTGAAATGTTCAAAATCTTTGGCCAGGTACTCGACTTTTTGACAGTGTGTGACATCTCCAACGCAGTATCAGACTGGAATCACATTTCTAGAACTCGTGTAACTCATGAAATGGATGCTTCTTCCTGCTTGACCAAATCAATGGCAGTCCTCCATCTATAA 1743 42.34 MLSNTPAELEYLHQDFEALSMSKRLMRSMSQKLRRKNNKSVAEEEDISRGISLRCLTLYGRGGGCKVGADTGEEIGDPGSRRRSSASEEGKGYKSLFGTEENSVDCFSYGVKERFRKKQSPKHSELRDSTRNSDVHIFLPDDILEMCLMRLPITSLMNARLVCKKWRYLTSTRRFLQMRRECLYQTPWIFLFGAVKEGYCSGEIHALDVSLKQWHRIDADILKGRFMFSIASIHDDIYIIGGCSSLTNFGKVDKSSFRTHKGVLVFSPLTKSWRKIASMKYARSMPILGTSEVNSEFSVVQSHHNRQDRRYLRSRAGGSLDVYEDPHRLSLRRQVRNPVEDNDISMLSNRKSYKFIRQKSDQSRAKGHRRFVIIAIGGLGSWDEPIDSGEIYDSLSNKWTEIQRLPADFGIICSGVVCNGIFYVYSETDRLAGYDIERGFWIGIQTSPFPPRVHEYYPKLVSSNGRLFMLSVSWCEGDGQIGQRNKAVRKLWELDLTYLAWTEVSVHPDAPMDWNAAFVADRNLIFGIEMFKIFGQVLDFLTVCDISNAVSDWNHISRTRVTHEMDASSCLTKSMAVLHL 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22618323 22620065 + CcPI632755_08g010820.1 Cco08g1082 185556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1082 580 SUPERFAMILY F-box domain 138 201 IPR036047 GO:0005515(InterPro)
Cco08g1082 580 SMART fbox_2 139 179 IPR001810 GO:0005515(InterPro)
Cco08g1082 580 MobiDBLite consensus disorder prediction 75 89 - -
Cco08g1082 580 FunFam F-box/kelch-repeat protein isoform A 152 300 - -
Cco08g1082 580 Pfam Kelch motif 373 405 IPR006652 GO:0005515(InterPro)
Cco08g1082 580 MobiDBLite consensus disorder prediction 69 92 - -
Cco08g1082 580 CDD F-box_AtFBW1-like 138 175 - -
Cco08g1082 580 PANTHER OS09G0555300 PROTEIN 7 580 - GO:0019005(PANTHER)
Cco08g1082 580 SMART kelc_smart 372 419 IPR006652 GO:0005515(InterPro)
Cco08g1082 580 SMART kelc_smart 236 293 IPR006652 GO:0005515(InterPro)
Cco08g1082 580 Gene3D - 138 174 - -
Cco08g1082 580 Pfam Kelch motif 228 283 - -
Cco08g1082 580 Gene3D - 175 324 IPR015915 GO:0005515(InterPro)
Cco08g1082 580 Gene3D - 362 568 IPR015915 GO:0005515(InterPro)
Cco08g1082 580 Pfam F-box domain 139 176 IPR001810 GO:0005515(InterPro)
Cco08g1082 580 SUPERFAMILY Kelch motif 187 527 IPR015915 GO:0005515(InterPro)
Cco08g1082 580 ProSiteProfiles F-box domain profile. 133 179 IPR001810 GO:0005515(InterPro)
Cco08g1082 580 FunFam F-box/kelch-repeat protein At5g42360 364 568 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1082 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g74 . . . . . . . . Cmo05g00989 Cmo12g00622 . . . Car12g00663 . . Cpe07g00596 Bhi04g01221 . . . . . . Cla08g00935 Cam08g1382 Cec08g0963 Cco08g1082 Clacu08g1089 . Cre08g0872 . . Cone17ag1463 Cone20ag0013 . . . Cme03g01334 . Blo18g00741 . Bda01g01565 Bpe02g01759 . Bma01g00698 . . . . Cma12g00686 Cma05g00969 Car05g00853 . Cpe11g00781 . . . . . . . . . . . . . . . Lsi08g00777 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007825 1 2 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 2 1 1 35