Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1086 | ATGTGCTTGGTTTTACCTTCCCCTGCCACGCGTGATCACGATTGGGTCGTAGCCATTGCAGATCGGATGGCAGAGAGTTGGGATGGAAGTTATGATGACTCTGGAAGCATATCAGATGAGAGCAGTTATTATGCGAGACTGCATATTGAACCTATTTATGACTCGTTTTTGTGCCCTTTAACGAAGCAAGTAATGCGGGATCCTGTTACTATAGAGAGTGGGCAAACGTTTGAACGTGCGGCCATTGAAATGTGGTTTAACGAATGCAGGGAAAGTAGAAGGAGGCCAATCTGTCCAATGACACTAAAAGAATTAAGAAGCACGGATCTGAATCCCAGTATTGCTCTGCGGAATACTATTGAAGAGTGGACTGCTAGAAATGAAGCTGTTCAGCTGGATATGGCTCGTAAGTCACTTAACTTGGGAAGTCCAGAAAGTGAAACTTTGGGATCTTTGAAGTATGTTCAGCATGTATGCCAAAAGGGTTTGTCAAGGCACATCGCACGAAATGCTGGGTTAATACCTATGATTGTTAGCTTGTTGAAGAGCACCAGTCGAAAGGTCCAGTTTAGAGCTTTGGAAACCCTTAGGATCGTGGCACAAGAAGACAATGAGTGTAAGGAGATGTTAGCTGAAGGTGACACTCTTCACACAGTAGTAAAGTTCTTGCGTCATGAGCGTTCGAGGGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCAAGTCCGAAGCCTTGTGTGAAGAGATTGGTTCAGTTAATGGGGCTATTCTTATATTAGTTGGAATGTCGAGTAGCAAATCTGAGAACATCACCACAGTTGAAAATGCTGACAGAACATTAGAAAACCTGGAGAAGTGTGAGAATAACATTCGGCAAATGGCTCAATATGGTAGACTGAGGCCTCTTCTGACACAGATTCTTGAAGGTGCGTACATGATCTTCAGTTGTAGAGTTATTAGTAGTTCTCATTTGTTCACCTTTGCCTCTTATACTGGTATCAAGTCCAATGTGGAAAGAATTTATAGCACTCTCCTAACGAAACGTACACTCTATTTTGAGCAAAATATTGGTGTTACTTGTTAG | 1089 | 42.79 | MCLVLPSPATRDHDWVVAIADRMAESWDGSYDDSGSISDESSYYARLHIEPIYDSFLCPLTKQVMRDPVTIESGQTFERAAIEMWFNECRESRRRPICPMTLKELRSTDLNPSIALRNTIEEWTARNEAVQLDMARKSLNLGSPESETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRKVQFRALETLRIVAQEDNECKEMLAEGDTLHTVVKFLRHERSREKEEAVALLYELSKSEALCEEIGSVNGAILILVGMSSSKSENITTVENADRTLENLEKCENNIRQMAQYGRLRPLLTQILEGAYMIFSCRVISSSHLFTFASYTGIKSNVERIYSTLLTKRTLYFEQNIGVTC | 362 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 22635480 | 22637089 | - | CcPI632755_08g010860.1 | Cco08g1086 | 185560 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1086 | 362 | Coils | Coil | 275 | 295 | - | - | |
Cco08g1086 | 362 | SMART | Ubox_2 | 55 | 123 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco08g1086 | 362 | CDD | RING-Ubox_PUB | 53 | 110 | IPR045210 | - | |
Cco08g1086 | 362 | SUPERFAMILY | RING/U-box | 40 | 133 | - | - | |
Cco08g1086 | 362 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 52 | 129 | IPR013083 | - | |
Cco08g1086 | 362 | Gene3D | - | 130 | 323 | IPR011989 | - | |
Cco08g1086 | 362 | Pfam | U-box domain | 54 | 128 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco08g1086 | 362 | SUPERFAMILY | ARM repeat | 132 | 307 | IPR016024 | - | |
Cco08g1086 | 362 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 34 | 314 | IPR052608 | - | |
Cco08g1086 | 362 | ProSiteProfiles | U-box domain profile. | 51 | 130 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Cco08g1086 | 362 | SMART | arm_5 | 203 | 243 | IPR000225 | GO:0005515(InterPro) | |
Cco08g1086 | 362 | SMART | arm_5 | 161 | 201 | IPR000225 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g1086 | Cco-Chr8:22635480 | Cco10g1817 | Cco-Chr10:31793055 | 9.50E-13 | dispersed | |
Cco08g1086 | Cco-Chr8:22635480 | Cco05g2608 | Cco-Chr5:34325847 | 6.70E-43 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1086 | - | - | - | 0.0 |