Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1086 ATGTGCTTGGTTTTACCTTCCCCTGCCACGCGTGATCACGATTGGGTCGTAGCCATTGCAGATCGGATGGCAGAGAGTTGGGATGGAAGTTATGATGACTCTGGAAGCATATCAGATGAGAGCAGTTATTATGCGAGACTGCATATTGAACCTATTTATGACTCGTTTTTGTGCCCTTTAACGAAGCAAGTAATGCGGGATCCTGTTACTATAGAGAGTGGGCAAACGTTTGAACGTGCGGCCATTGAAATGTGGTTTAACGAATGCAGGGAAAGTAGAAGGAGGCCAATCTGTCCAATGACACTAAAAGAATTAAGAAGCACGGATCTGAATCCCAGTATTGCTCTGCGGAATACTATTGAAGAGTGGACTGCTAGAAATGAAGCTGTTCAGCTGGATATGGCTCGTAAGTCACTTAACTTGGGAAGTCCAGAAAGTGAAACTTTGGGATCTTTGAAGTATGTTCAGCATGTATGCCAAAAGGGTTTGTCAAGGCACATCGCACGAAATGCTGGGTTAATACCTATGATTGTTAGCTTGTTGAAGAGCACCAGTCGAAAGGTCCAGTTTAGAGCTTTGGAAACCCTTAGGATCGTGGCACAAGAAGACAATGAGTGTAAGGAGATGTTAGCTGAAGGTGACACTCTTCACACAGTAGTAAAGTTCTTGCGTCATGAGCGTTCGAGGGAGAAGGAGGAAGCTGTAGCTTTGCTGTATGAGCTTTCCAAGTCCGAAGCCTTGTGTGAAGAGATTGGTTCAGTTAATGGGGCTATTCTTATATTAGTTGGAATGTCGAGTAGCAAATCTGAGAACATCACCACAGTTGAAAATGCTGACAGAACATTAGAAAACCTGGAGAAGTGTGAGAATAACATTCGGCAAATGGCTCAATATGGTAGACTGAGGCCTCTTCTGACACAGATTCTTGAAGGTGCGTACATGATCTTCAGTTGTAGAGTTATTAGTAGTTCTCATTTGTTCACCTTTGCCTCTTATACTGGTATCAAGTCCAATGTGGAAAGAATTTATAGCACTCTCCTAACGAAACGTACACTCTATTTTGAGCAAAATATTGGTGTTACTTGTTAG 1089 42.79 MCLVLPSPATRDHDWVVAIADRMAESWDGSYDDSGSISDESSYYARLHIEPIYDSFLCPLTKQVMRDPVTIESGQTFERAAIEMWFNECRESRRRPICPMTLKELRSTDLNPSIALRNTIEEWTARNEAVQLDMARKSLNLGSPESETLGSLKYVQHVCQKGLSRHIARNAGLIPMIVSLLKSTSRKVQFRALETLRIVAQEDNECKEMLAEGDTLHTVVKFLRHERSREKEEAVALLYELSKSEALCEEIGSVNGAILILVGMSSSKSENITTVENADRTLENLEKCENNIRQMAQYGRLRPLLTQILEGAYMIFSCRVISSSHLFTFASYTGIKSNVERIYSTLLTKRTLYFEQNIGVTC 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22635480 22637089 - CcPI632755_08g010860.1 Cco08g1086 185560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1086 362 Coils Coil 275 295 - -
Cco08g1086 362 SMART Ubox_2 55 123 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco08g1086 362 CDD RING-Ubox_PUB 53 110 IPR045210 -
Cco08g1086 362 SUPERFAMILY RING/U-box 40 133 - -
Cco08g1086 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 129 IPR013083 -
Cco08g1086 362 Gene3D - 130 323 IPR011989 -
Cco08g1086 362 Pfam U-box domain 54 128 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco08g1086 362 SUPERFAMILY ARM repeat 132 307 IPR016024 -
Cco08g1086 362 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 34 314 IPR052608 -
Cco08g1086 362 ProSiteProfiles U-box domain profile. 51 130 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco08g1086 362 SMART arm_5 203 243 IPR000225 GO:0005515(InterPro)
Cco08g1086 362 SMART arm_5 161 201 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1086 Cco-Chr8:22635480 Cco10g1817 Cco-Chr10:31793055 9.50E-13 dispersed
Cco08g1086 Cco-Chr8:22635480 Cco05g2608 Cco-Chr5:34325847 6.70E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1086 - - - 0.0