Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1093 ATGAGTTGCTTGTTTTGTGTTACTCCTCGTACTCAGGATGGGAGCCGGGTCGAGTCTGACAGTCGTGTTCGATTTGAATCCCGGCATTCTGTTAATTCCTCAGGTACATGGAGGGGAAAAGAAGGTGAGAGCAACAGGGAAAGTTGTACGAAGGGGAGCGCAGCTGCTCGTAGTTTTACGTTCCGTGAACTCGCCATGGCTACAAGAGGTTTCAAGGAAATAAATTTGCTTGGGGAGGGTGGTTTTGGACGTGTTTACAAAGGACGTTTGGAATCCGGACAGATTGTTGCAGTTAAACAGCTTAATCGTGATGGGCTTCAAGGCTTTCAAGAATTCATTGTGGAGGTTCTCATGTTGAGTCTGTTGCACCATCCCAATCTCGTTACCTTGATTGGTTACTGTACTGATGGAGATCAAAGGCTTTTGGTTTATGAGTACATGCCTATGGGAAGCCTGGAAGATCATCTGTTTGATTTGGGTACTGACAAAAAGCCACTGAGTTGGAATACAAGGATGAAGATTGCAGTCGCTGCTGCCCGAGGTCTTGAGTATCTCCACTGTAAAGCAAATCCCCCAGTCATATATCGTGACTTGAAATCAGCTAATATCTTACTGGACAATGACTTCAATCCTAAGCTTTCAGATTTCGGATTAGCTAAACTGGGACCTGTTGGTGACAATACTCATGTTTCAACTAGAGTAATGGGAACGTATGGATATTGTGCTCCAGAGTACGCCATGAGTGGTAAATTAACCCTTAAATCTGATATTTACAGCTTTGGTGTGGTTCTGCTTGAGCTCATTACGGGGCGCAAGGTAATTGATACAAAAAGGAGACCAGGAGAGCAGAACTTAGTTGCTTGGTCCCGTCCTATACTTAAGGACCGGAGAAAGTTCGCGGAATTAGTTGATCCCCTGTTGGAAGGACACTTCCCTCTTCGTTGTTTGCAACATGCAGTTGCAATTACTGCAATGTGTCTACAGGAACAACCATCATTTCGCCCTCTTATAAGTGATATTGTTGTAGCACTCGAGAATCAGATCCCTGAAATTGCTAAACTTCTGTTTGGAGGTTGCTGTATAGAAGTTGCTGAAAAGCTATGTGCATAG 1110 44.23 MSCLFCVTPRTQDGSRVESDSRVRFESRHSVNSSGTWRGKEGESNRESCTKGSAAARSFTFRELAMATRGFKEINLLGEGGFGRVYKGRLESGQIVAVKQLNRDGLQGFQEFIVEVLMLSLLHHPNLVTLIGYCTDGDQRLLVYEYMPMGSLEDHLFDLGTDKKPLSWNTRMKIAVAAARGLEYLHCKANPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRKVIDTKRRPGEQNLVAWSRPILKDRRKFAELVDPLLEGHFPLRCLQHAVAITAMCLQEQPSFRPLISDIVVALENQIPEIAKLLFGGCCIEVAEKLCA 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22692082 22696080 + CcPI632755_08g010930.1 Cco08g1093 185567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1093 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g1093 369 Gene3D Phosphorylase Kinase; domain 1 42 146 - -
Cco08g1093 369 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524(InterPro)
Cco08g1093 369 Gene3D Transferase(Phosphotransferase) domain 1 147 353 - -
Cco08g1093 369 FunFam Serine/threonine-protein kinase PBS1 147 352 - -
Cco08g1093 369 PANTHER OS07G0668900 PROTEIN 34 346 - -
Cco08g1093 369 ProSiteProfiles Protein kinase domain profile. 71 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1093 369 CDD STKc_IRAK 77 346 - -
Cco08g1093 369 SMART serkin_6 71 351 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1093 369 Pfam Protein kinase domain 72 340 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1093 369 SUPERFAMILY Protein kinase-like (PK-like) 53 344 IPR011009 -
Cco08g1093 369 FunFam probable serine/threonine-protein kinase RLCKVII 42 146 - -
Cco08g1093 369 MobiDBLite consensus disorder prediction 32 51 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1093 Cco-Chr8:22692082 Cco11g1924 Cco-Chr11:31943122 1.80E-152 dispersed
Cco08g1093 Cco-Chr8:22692082 Cco08g1094 Cco-Chr8:22698040 4.40E-17 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87036 PF00069 Pkinase 3.30E-48 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1093 - - - 0.0