Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1097 ATGGATCCTTACAAGTACCGGCCTTCAAGTGCGTACAACACCCCATTCTGCACGACAAACTCCGGCGCACCAGTATGGAACAACACCGCCGTGATGTCCGTCGGAGAACGAGGCCCAATCCTGTTAGAAGACTATCAACTCATCGAAAAAATCGCGACCTTCACCCGCGAGCGAATCCCGGAGCGAGTAGTCCACGCCCGAGGAGCCAGCGCCAAGGGGTTCTTCGAAGTAACCCACGACATCTCCGACCTAACCTGCGCCGACTTCCTCCGTGCCCCCGGTGTCCAAACCCCCGTCATCGTCCGTTTCTCCACCGTCATCCACGAGCGCGGCAGCCCCGAAACCCTCCGTGACCCCCGTGGATTCGCCGTCAAATTCTACACACGTGAAGGCAACTTCGACTTAGTGGGCAACAACTTCCCCGTATTCTTCGTACGTGACGCAATGCAATTCCCCGACGTCATCCGTGCCTTCAAACCCAACCCCAAATCCCACCTCCAAGAGCCATGGAGATTCCTGGATTTCTGCTCTTACCATCCGGAAAGCCTTCTGTCTTTCGCTTGGTTCTACGATGACGTGGGCATCCCAATCAACTACCGCCACATGGAAGGCTTCGGCGTCCAAGCCTACTCTCTAATCAACAAAGCTGGGAAAGCCCGGCTTGTCAAATTCCATTGGAAACCCACTTGCGGTGTGAAAAGCATGCTGGAGGAGGAAGCTGTTAGGATTGGTGGGACCAACCATAGTCACGCAACTCAGGACTTGTACGAGTCCATTGCGGCTGGGAATTTCCCTGAGTGGAGACTTTATATTCAGACCATTGATTACGAGGACCAAAACAACTATGATTTTGAGCCGTTGGATACCACCATCGCTTGGCCTGAGGATGTGATACCGTTGCAGCCGGTGGGACGGTTGGTGTTGAATAAGAATATTGATAACTTCTTTGCGGAGAATGAGATGTTGGCGTTCTCCATGTCGTTGGTGCCTGGGATTCATTACTCGGATGATAAGATGTTGCAAGCTAGGAGTTTTGCTTATGCGGATACACAGAGGCATCGCCTTGGACCTAACTATCTTCAGCTCCCAGTGAATGCTCCTAAATGTCCTCACCATAATAACCACCATGAAGGATTTATGAACTTCATGCATAGAGATGAGGAGGTGAATTACTTCCCTTCAAGATATGATCCTTGTCGCCATGCTGAGAAGTTCCCGATGCCGCCTAATGTGTTGAGCGGCAAAAGAGAAAGGTGTGTGATTCCCAAGGAGAATCATAACTTTAAGCAAGCTGGAGACAGATACCGATCATGGGCACCAGATAGGCAAGAGCGGTTCGTAAGACGGTTTGTGGAAGCGTTATCGGACCCCCGCGTCACACACGAGGTTCGCAACATATGGATCTCGTATTGGACTCAGGCTGACAGGTCATTGGGCCAAAAGATAGCGTCTCGTGTGAATGTGAGGCCAAACATCTAA 1479 51.45 MDPYKYRPSSAYNTPFCTTNSGAPVWNNTAVMSVGERGPILLEDYQLIEKIATFTRERIPERVVHARGASAKGFFEVTHDISDLTCADFLRAPGVQTPVIVRFSTVIHERGSPETLRDPRGFAVKFYTREGNFDLVGNNFPVFFVRDAMQFPDVIRAFKPNPKSHLQEPWRFLDFCSYHPESLLSFAWFYDDVGIPINYRHMEGFGVQAYSLINKAGKARLVKFHWKPTCGVKSMLEEEAVRIGGTNHSHATQDLYESIAAGNFPEWRLYIQTIDYEDQNNYDFEPLDTTIAWPEDVIPLQPVGRLVLNKNIDNFFAENEMLAFSMSLVPGIHYSDDKMLQARSFAYADTQRHRLGPNYLQLPVNAPKCPHHNNHHEGFMNFMHRDEEVNYFPSRYDPCRHAEKFPMPPNVLSGKRERCVIPKENHNFKQAGDRYRSWAPDRQERFVRRFVEALSDPRVTHEVRNIWISYWTQADRSLGQKIASRVNVRPNI 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22717225 22721428 - CcPI632755_08g010970.1 Cco08g1097 185571

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1097 492 PIRSF Catalase_clade1-3 7 491 IPR024711 GO:0004096(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1097 492 PANTHER CATALASE 13 488 IPR018028 GO:0004096(InterPro)|GO:0004096(PANTHER)|GO:0005737(PANTHER)|GO:0005777(PANTHER)|GO:0005886(PANTHER)|GO:0006979(InterPro)|GO:0020037(PANTHER)|GO:0020037(InterPro)|GO:0042542(PANTHER)|GO:0042744(PANTHER)
Cco08g1097 492 SMART Catalase_2 18 400 IPR011614 GO:0004096(InterPro)|GO:0020037(InterPro)
Cco08g1097 492 FunFam Catalase 14 492 - -
Cco08g1097 492 ProSitePatterns Catalase proximal active site signature. 54 70 IPR024708 GO:0004096(InterPro)
Cco08g1097 492 PRINTS Catalase signature 299 326 IPR018028 GO:0004096(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1097 492 PRINTS Catalase signature 94 112 IPR018028 GO:0004096(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1097 492 PRINTS Catalase signature 115 132 IPR018028 GO:0004096(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1097 492 PRINTS Catalase signature 330 356 IPR018028 GO:0004096(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1097 492 PRINTS Catalase signature 31 54 IPR018028 GO:0004096(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1097 492 PRINTS Catalase signature 134 152 IPR018028 GO:0004096(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1097 492 Pfam Catalase-related immune-responsive 424 485 IPR010582 -
Cco08g1097 492 CDD catalase_clade_1 18 486 - -
Cco08g1097 492 SUPERFAMILY Heme-dependent catalase-like 12 489 IPR020835 GO:0020037(InterPro)
Cco08g1097 492 Gene3D Catalase core domain 15 491 - -
Cco08g1097 492 ProSitePatterns Catalase proximal heme-ligand signature. 343 351 IPR002226 GO:0020037(InterPro)
Cco08g1097 492 ProSiteProfiles catalase family profile. 14 492 IPR018028 GO:0004096(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco08g1097 492 Pfam Catalase 18 397 IPR011614 GO:0004096(InterPro)|GO:0020037(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1097 K03781 - - csv:101216662 1022.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1097 Cco-Chr8:22717225 Cco11g1920 Cco-Chr11:31889123 4.00E-240 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g98 Blo01g01636 Blo12g00854 . Bda03g00319 Bpe02g00309 Bpe04g00280 Bma04g00287 Bma01g02409 Cmo05g00996 Cmo12g00616 Cma01g02012 Cma09g00054 Car01g01582 Car12g00658 . Cpe06g00023 Cpe07g00589 Bhi04g01227 . . . Hepe08g1506 . . Cla08g00942 Cam08g1392 Cec08g0974 Cco08g1097 Clacu08g1099 . Cre08g0883 . . . . Lsi04g01805 Csa04g02699 . Cme03g01342 . . Bda11g00972 . . . . . Sed08g1839 . . Cma12g00678 Cma05g00977 Car05g00858 Car09g00047 Cpe11g00788 Cpe02g00036 Bhi09g02890 Tan01g5104 Cmetu03g1562 . Hepe01g2339 Mch11g0058 . Cla11g01822 Cam11g1888 Cec11g1913 Cco11g1920 Clacu11g2052 Cmu11g1857 Cre11g2263 Lsi08g00787 . Chy07g00390 Cme07g00057
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001453 3 3 2 3 3 1 4 2 1 3 1 2 4 3 1 2 1 3 4 2 3 2 2 2 2 1 2 5 2 1 70