Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1123 ATGGAACTCAATCAGCTTAACCAAGATCCAATTTCCGGTGCTTTCATCCGTGGCCTTGTTAAACATTTGAAACCCAAGGAACCCATCAATCCCAATTCCTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCAGACATCAATCCTTCTAAAATGGCGGAACAAATTCCCAAACCTCAACCAACACAAACCCACAAGAAGCAAGTTCGAAGAAGGCTCCATACCAGTCGACCTTATCAAGAACGCTTGTTGAATATGGCGGAAGCCAGAAGGGAGATTGTCACTGCGCTTAAGTATCACCGGGCCGCTATGAAAAAGGCCGCCGCCACCGCTGCCACCGGTACCACCGCTGAGCAGCAACGGCAACCGCAGACGCCGCTGGAGTTATCCCCTGCCAGATCCCAAGAAGGGAAGATCAGACCCAGGAAAATCCCCAAATCTACAGAGAGGAATAGAATTTATGAAACCCAGAATGATTTCAAGTATAGTGAAAATTATAACAATAACAACAATAATAATTTGAAGAATTTTTGTTATGATCCATCGATGATGATGATGAATTGTTCATTCCCGAGTTGGTCGATGAATTCGCAAACGGTGGAAGGGAATAATATTGTGGACATTGTATTACCAGAACAAACTCTAGGGCTGAATCTCAACTTGCAGGATTTCAACAATTTGGAAACAAATCTGTTCTCAAACGGCGGGGTTTCGGGTTCGGGATCGTCGTCGACGTCGACATCATCTCCAAGCCTTTCGATTGCGACAGATCAGGAAGCTCGGAATTGTGGAAGAGAGTCGAATACGAGGGGAGGCGGAGGACTGCACGTGGCGGTGGGGGAGGAGGAGATGGCGGAGATGAGATCGATAGGGGAGAAACATGAGATGGAATGGAGTGATAAGATGAATTTGGTGAAATCGGCGTGGTGGTTGAGGTTTATGAAGATGGGAAAAAAGGAAGAGGAAGAAGAAGAAGAAGGGTTTGGGGATCCGTTCCATCAGATTTTGGAATTTCCAGATTGGATGAACAATGGAAACGAGAGTTGTTTTCAAGAACAATTGTTGAATGATTACCAGTTCTTCCATCATGATCATCCTTCTGCTCTTCCTTGCATGGACATTGGAGAGTTTGAAGGCATGGATGGGGAGTGGTTAGCTTGA 1167 45.42 MELNQLNQDPISGAFIRGLVKHLKPKEPINPNSSSSSSSSSSSSSSSDINPSKMAEQIPKPQPTQTHKKQVRRRLHTSRPYQERLLNMAEARREIVTALKYHRAAMKKAAATAATGTTAEQQRQPQTPLELSPARSQEGKIRPRKIPKSTERNRIYETQNDFKYSENYNNNNNNNLKNFCYDPSMMMMNCSFPSWSMNSQTVEGNNIVDIVLPEQTLGLNLNLQDFNNLETNLFSNGGVSGSGSSSTSTSSPSLSIATDQEARNCGRESNTRGGGGLHVAVGEEEMAEMRSIGEKHEMEWSDKMNLVKSAWWLRFMKMGKKEEEEEEEGFGDPFHQILEFPDWMNNGNESCFQEQLLNDYQFFHHDHPSALPCMDIGEFEGMDGEWLA 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23008093 23010558 + CcPI632755_08g011230.1 Cco08g1123 185597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1123 388 MobiDBLite consensus disorder prediction 238 264 - -
Cco08g1123 388 MobiDBLite consensus disorder prediction 114 133 - -
Cco08g1123 388 MobiDBLite consensus disorder prediction 238 277 - -
Cco08g1123 388 MobiDBLite consensus disorder prediction 112 150 - -
Cco08g1123 388 MobiDBLite consensus disorder prediction 28 65 - -
Cco08g1123 388 MobiDBLite consensus disorder prediction 22 86 - -
Cco08g1123 388 PANTHER E1A-BINDING PROTEIN P400-LIKE 5 388 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1123 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1822 Cco-Chr5:27025633 Cco08g1123 Cco-Chr8:23008093 2.80E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g188 . . . . Bpe02g01570 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1712 Cone7ag1630 . . . . . . . . Bda01g01355 . Bpe14g00291 . . Bma02g00329 . . . . . . Car05g00884 . . . . . . . . . Cla08g00972 Cam08g1421 Cec08g1000 Cco08g1123 Clacu08g1125 . Cre08g0909 Lsi08g00820 . Chy03g00643 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007807 2 1 2 2 3 1 1 1 1 1 1 1 1 1 1 0 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36