Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1124 ATGGCTGCTGCAGCTGCAACCACCGGCGAGCAAAGCCACCGCCGCCGATCAGTGTCCAAAGTGGGCATAATTGGGGCCGGCATTAGCGGAATCGCTGCCGCTAAGCATCTCTCCAGTCACCACCCAGTGGTTTTTGAGGCGACGGATTCTATAGGCGGCGTGTGGAAGCACTGCGCTTATCGGACCACCCGGCTGCAGACGCCTCGCCGGGATTTTGAATTCTCCGATTACCCGTGGCCGCCGCAGACGACGGGGAATGATGACTTTCCCACGTATTTGGAGGTCTTGGATTATTTGCATGGCTATGCAACGCATTTTGATGTGCTCAAGTTCGTCAAGTTTAATTGTAAAGTGGTTCAACTCCGATACATTGGCGGCCCGGAAGCTGAAGATTCCACGGCGGCCGGAGTGTACGGAAGCCTACTTAATGGCCGTCCTGTTTGGGAAGTCGCCGTTGTAGACACTCAGCTCAACACCACTCAGTGGTATGAATTGGAGTTGGTGGTGATGTGTGTGGGAAGATATGGAGATGTACCAAACATACCAAAATTCCCTCAAAACAAAGGTCAAGAAATTTTCAAAGGCAAAGTTTTACATTCAATGGACTATGCCAAGCTTGACCATGATGCTGCACGTGCCCTACTTCAACACAAGCGTGTTGCCATTGTTGGTTATCGAAAATCTGCTATTGATTTGGCTGTTGAATGTGCCGAAGCAAATCAAGGACCTGAAGGGCAGCCCTGCACAATGGTGATTAGGTCATTGCATTGGACAGTCCCATCTTATAGAATATGGGGATTGCCCTTTTTCTTATTTTACTCAACAAGATTCTCTCAATTCCTCCAAGAAAGCCCAAATCAAGGCCTCCTCAAGGCCCTTTTCTGCTGTCTCTTTTCTCCCATGAGAAAGGTAATTTCAAAGTTCATAGAGTCATATCTAACATGGAAGTTGCCATTAGAGAAGTATGGGCTAAAACCAGAGCACCCATTTGAAGAGGACTATGCATCTTGCCAAATGGCTATCATGCCAAAGAATTTCTTTGAGGAGGCAGAGAAAGGGAAGATTTTGTTCAAAAAGACATCTAAATGGTGGTTTTGGAGTGGTGGAGTTCAATTTGAAGATAACACCAAATTAGAAGCTGATGTTGTGATTCTCAACACTGGTTTTCAAGGCAAACAAAAACTTCAATCATTGTTGCCTCATCCTTTCAAAACCCTTTTGCTTGATTCCTCTCATATCATTCCTTTGTACAGGGGCGTGATTCATCCGCTAATACCAAACATGGGATTTGTGGGATATGTTGAGAGTGTATCAAACCTTCGTACTGGAGAGCTACGGTGCAAATGGCTGGCAAAATTGGCGGAAGATGCCTTCAAACTTCCTACCATTCACAAAATGCTTCAACAAATTGCAAATGAAATTCAAGTCATGAAGAACACAACACGTTTTTACAAGCGTCAATGTGTTTCTACCTTCAGCATTAGCTACACTGATGAAATTTCTCAAGAGATGGAAAATGCTATTCACTTAAATTAA 1536 44.99 MAAAAATTGEQSHRRRSVSKVGIIGAGISGIAAAKHLSSHHPVVFEATDSIGGVWKHCAYRTTRLQTPRRDFEFSDYPWPPQTTGNDDFPTYLEVLDYLHGYATHFDVLKFVKFNCKVVQLRYIGGPEAEDSTAAGVYGSLLNGRPVWEVAVVDTQLNTTQWYELELVVMCVGRYGDVPNIPKFPQNKGQEIFKGKVLHSMDYAKLDHDAARALLQHKRVAIVGYRKSAIDLAVECAEANQGPEGQPCTMVIRSLHWTVPSYRIWGLPFFLFYSTRFSQFLQESPNQGLLKALFCCLFSPMRKVISKFIESYLTWKLPLEKYGLKPEHPFEEDYASCQMAIMPKNFFEEAEKGKILFKKTSKWWFWSGGVQFEDNTKLEADVVILNTGFQGKQKLQSLLPHPFKTLLLDSSHIIPLYRGVIHPLIPNMGFVGYVESVSNLRTGELRCKWLAKLAEDAFKLPTIHKMLQQIANEIQVMKNTTRFYKRQCVSTFSISYTDEISQEMENAIHLN 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23011117 23015180 - CcPI632755_08g011240.1 Cco08g1124 185598

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1124 511 PANTHER DIMETHYLANILINE MONOOXYGENASE 20 505 IPR050346 -
Cco08g1124 511 Gene3D - 338 509 IPR036188 -
Cco08g1124 511 FunFam Flavin-containing monooxygenase 18 287 - -
Cco08g1124 511 Gene3D - 14 285 IPR036188 -
Cco08g1124 511 PIRSF FMO 17 511 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Cco08g1124 511 SUPERFAMILY FAD/NAD(P)-binding domain 20 436 IPR036188 -
Cco08g1124 511 SUPERFAMILY FAD/NAD(P)-binding domain 20 270 IPR036188 -
Cco08g1124 511 Pfam Flavin-binding monooxygenase-like 20 505 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1124 K00485 - - csv:101205746 894.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1533 Cco-Chr3:29963131 Cco08g1124 Cco-Chr8:23011117 2.80E-191 dispersed
Cco06g1378 Cco-Chr6:24270579 Cco08g1124 Cco-Chr8:23011117 6.50E-111 dispersed
Cco07g0465 Cco-Chr7:5563233 Cco08g1124 Cco-Chr8:23011117 1.70E-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g187 . . . . . Bpe02g00314 . . . . . . . . . . . Bhi04g01538 Tan02g1562 Cmetu03g0531 . Hepe08g1457 . Lcy13g2236 . . . . . . . Cone4ag1711 Cone7ag1629 . . . . . . Blo17g00265 . . . Bpe14g00290 . . Bma02g00330 . . . . . . . . . . . . . . . . Cla08g00973 Cam08g1422 Cec08g1001 Cco08g1124 Clacu08g1126 . Cre08g0910 Lsi08g00821 . Chy03g00644 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002096 2 2 3 2 3 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 3 2 2 2 2 63