Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1128 ATGGGAGGTGGTACGGTCGAAGTGGTTAGTAATAAAGGTTGTTCTAGGCTGTTTTTTGGGTTCTCATCACCGTTATCGTCATTGGGAGGTCTGCAACAGCTTGAGTCCATGTCTCTCGCTTCTCCGTCTTCAAGGTCTGAACCGGTGAAAGCGCGGTTAGCCGGTCCCTTTACTGGACTTGTAATTTGCGTCACTGGCTTATCCAAAGCCGATGTTGGTATTAATGTTCTCCTTGACAGTTACTACAGCTTAGGTGGACGCAAGTTTGAACACGCATTTAAGCATGGATCAAAAACTGGTCTCTTTGTTGTCTCTCTTGGCTGGTTTGTGGATAGTGTACGGAGAAATGTAAGACTGAGCGAATCTCTTTATAATATCAAGAGTCTCGGAGAAAATAGTGGACGCCTGGATGAATTGGACCAACTAGTAGGGTCCAGTGGTGATGGAAGCTCCTGCCTTCCACTGGGCATTCGTGGAGTTGAACAAAGTGATATGATAGGAGAATCTCAACTACCATTCTCTAAAAAAGATCGTGACAGAAGGATGGCCTCTAATCTTTCTGGTCAATCCATGTATATTGATACAGACATTTCACCAGAGCTGCGTCATAAGGTTATTGAGGCGGCTAAGGGAGTCGGTGCCTCACTTGTGGATCAATGGTTTGCTGGTTGCAGCACAAGTCACGTGGTTTGTGAAAGGACTTCCATCCATCGATATCTTGGCCACTCCAGCAATTTAGTTACGCCACTCTGGGTTCTCAAAACTGTGAAGGAGAAACATGTGCAAAGACTTATTCACATGTCTGCTGACTTGGCTCGACAGATTAGTTCAACGCTTGAAGATCTTTGTGCGGAAAACTTTACAGAGGCAAAAAATAGGCAACCAGAAGACGCTAGAAATTCTAGAAGTAAGGCAACCCAGGCAGAACGCGAACAGATTATTTCAAATGCTAAACTTGGGGTGAGGAAACGTCGTGCTTGTCGAATGCAGATGTGTCAAAACCCAATTCGTCCATTAACCCCAAGTAGCCTTTTGGATTCAATCTGCTGGTCAATATCTGAGCCAAGTTCATCTGCTTCTATTTACACAGACTCTTTCAGTAGTGAAGGTGTTAGTGAGCATCATACTCCAGAGTTCTTTGATGCTACAGGAGATGACAAGGAATCAGAAGCTTCATTTGCAAACTTAACTCGCCCACTCAGTGAAAGTGAGAAATCTGAAGTTGTATTCAAAAACCATTTCTTGACCATACTATTTCCAGTGGATCGTTTCTTCGAGATGGGACCATCTTCAAGGACCTTTTTTAGCAACAAGGGGTTCACATGTTTCCAGATTCTCGATCATATTTATGCGTTTTATCAGGAGAACATGTCAGATCATGAAATAGAGATGGCAATTCACACTGACTCAAGGCATGCTGACCGACTTCGATCGGTTTATTGTAGAGAAACAACAGAATCTGGTCATACAGTTTTCAAAAGGATAGAATTCCTGGGGAGCCGCAGAAGTTTTGAAATGTTGAAGCGTGTTAGCGTTGACAACAACAGTAATGTCTACGAGTTATTGATCAGAGCATGA 1578 43.47 MGGGTVEVVSNKGCSRLFFGFSSPLSSLGGLQQLESMSLASPSSRSEPVKARLAGPFTGLVICVTGLSKADVGINVLLDSYYSLGGRKFEHAFKHGSKTGLFVVSLGWFVDSVRRNVRLSESLYNIKSLGENSGRLDELDQLVGSSGDGSSCLPLGIRGVEQSDMIGESQLPFSKKDRDRRMASNLSGQSMYIDTDISPELRHKVIEAAKGVGASLVDQWFAGCSTSHVVCERTSIHRYLGHSSNLVTPLWVLKTVKEKHVQRLIHMSADLARQISSTLEDLCAENFTEAKNRQPEDARNSRSKATQAEREQIISNAKLGVRKRRACRMQMCQNPIRPLTPSSLLDSICWSISEPSSSASIYTDSFSSEGVSEHHTPEFFDATGDDKESEASFANLTRPLSESEKSEVVFKNHFLTILFPVDRFFEMGPSSRTFFSNKGFTCFQILDHIYAFYQENMSDHEIEMAIHTDSRHADRLRSVYCRETTESGHTVFKRIEFLGSRRSFEMLKRVSVDNNSNVYELLIRA 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23076152 23080192 + CcPI632755_08g011280.1 Cco08g1128 185602

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1128 525 SUPERFAMILY BRCT domain 186 262 IPR036420 -
Cco08g1128 525 MobiDBLite consensus disorder prediction 290 314 - -
Cco08g1128 525 SUPERFAMILY BRCT domain 54 126 IPR036420 -
Cco08g1128 525 Gene3D BRCT domain 78 131 IPR036420 -
Cco08g1128 525 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 84 525 - -
Cco08g1128 525 Pfam Family of unknown function (DUF6699) 436 509 IPR046522 -
Cco08g1128 525 ProSiteProfiles BRCT domain profile. 181 259 IPR001357 -
Cco08g1128 525 MobiDBLite consensus disorder prediction 290 306 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1128 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g180 . . . . Bpe02g01568 . . . . . . . . . Sed08g1811 . . Bhi04g01532 Tan02g1572 Cmetu03g1762 . Hepe08g1448 . Lcy13g2233 . . . . . . . . . Cone17ag0955 Cone20ag0299 . . . . . Blo18g00254 . Bda13g01582 Bpe14g00286 . . Bma02g00333 . . . . . . Car05g00889 . . . . . . . . . Cla08g00978 Cam08g1427 Cec08g1005 Cco08g1128 Clacu08g1132 . Cre08g0915 Lsi08g00825 . Chy03g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007854 1 3 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 36