Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1129 ATGATACCGAGGCGTGCAGCAGCCTACTCTGCCGCAACTTTTGACATGCATGAGCCTGAGGAGGAAAATCGGGATGGTGCTCGCAAGAGAAGATTCAGTGAGCTGGAGCCCGGTGTTGCTTCTGATCAGTACAATTTCAACCAACCCATGGACGAGGGCTTCATTCCTAGAAGGTATCAAATGGAGGTTTTTGAAGTTGGTATGAGGAGAAACACCATAGCCGTGTTGGAAACAGGTTCTGGAAAGACCATGATCGCAGTGATGCTTATGAAAGAAATTGGAAAAGCTATGAAGTCCAGTGGTGATAAGAAGTTCATCATTTTCTTGGCTCCAACTGTTCATTTGGTTCATCAGCAATTTAACGTTATTAAAGTTCATACTGATTTTGAAGTGGCGGAATATTATGGTGCCATGGGGGTCGATGATTGGAATATGAACCGCTGGGACAAGGAAACAAGCGAACGCGATGTACTCGTTATGACCCCCCAAATTCTTCTTGATGCACTAAGGAAAGCATATTTTAGACTGGGAAGCGTATGCTTGATGATCATTGATGAATGCCATCGTGCTACTGGTAATCACCCTTATACGAAAATCATGAAGGAATTTTATCACAAATCTGACAACAAACCAAAGATTTTTGGAATGACTGCCTCACCTGTTATTAGAAAAGGTGTTTCCTCTTCCTCTGATTGTGAATGCCAAATAGCAGACCTTGAAAGTATCTTGGATTGTCAGATTTATTCTATTGAAGATAAGAAAGAAGTGGAAATATATGTTCCCTCTGCAAAGGAAATTTGCATATTTTATGAACCCGCTAAGCCTCAAACGGTGGAGTTGAAGGCAAAGATAGAAGCTCTGTGGTCCAAGTTTGATGCTTTATTGTCAAACTCACAAGGGGCGATGCAAGGTCATTATAAAGATGTAGACAGTAAGCTTAAGGCACTGAAGAAACGACTGTCCAGTGATCATTTAAAGATTGCTTATTGCCTTGACGAACTTGGTGTTATGTGTGCTTATGAGGCGATTAAAGTTCTATTAGAGAATGTCAAAGTTCCAAACGAGGAATCTGAGGTTTATAGAGAAAGTTTCTTGCAATATAAACATTTTCTCGAGGAAGCATTACTTGTAATTGGGGAATCATTTCCACTTGGAAATGAGAATATACCAAAATGTGGTTTTGACTTTTGGAAAGCTGTAGACTTGGGCTACATTTCTCCTAAATTGTTTGAACTTCTCCAACTCTTTGAATCATTTGGGGTATCTAGGCAGGTGCTCTGTCTCATATTTGTTGAAAGAATAGTTGCTGCTAATGTTATCGAAAGAATTGTGAAAAAAGTAGCAAATTTATCTCATTTTACGGTTTCATATGTGACGGGATGTAATGCATCAGTTGGTGCACTGGCACCGAAAGTCCAGAAGGAGACATTGGAGTTGTTTTGTCATGGCAAGCTCAATCTATTATTTTCCACTGATGTAGTTGAGGAGGGACTTCATGTACCAAATTGCTCATTTGTGGTACGGTTTGACCTTCCTAAGACGGTTCGTAGTTATGTACAATCTCGAGGTCGTGCTCGACAGAACAACTCCCAATATATTTTGTTGCTGGAGAGGGGAAACCTGAAGCAAAGAGCTCAGCTATTTGATGTCATAAGGAGTGACCGATCAATGACAGATGCAGCTACGAGTAGAGACCCTGATGCATGCATTTTGAAACCTTTTTCAGTTGTGGAGACAGATTGTTACACTGTGGAGGCAACTGGGGCTTCGGTTACTGCAGATTCTAGTGTTGGTCTCATATACCAATACTGTAAAAAGCTCCCTGGTGATAAATATTTCAGTCCAAAACCAATCTTTCAACTCTCATATGGTGAAGGATCCTACGAGTGTCAGCTAACTTTACCTCCTACAGCAGCCTTTCAAACCATAGTTGGTCCTTCAACTAGGAATTCTAATCTGTCTAAGCAGCTTGTATGCCTGGAGGCATGTAAGAAGCTACATCAAATGGGTTCACTTAATGACCATCTTCTCCCTTCTGTTGAAGAGAGATCAGAATTTGACATGGGTCTGAAAAGCAATGCATCCACTTCTAGAGCAGGATCAACAAAAAGAAAGGAACTGCACGGCAGATCTGCGATTAGGGCTTTAGCTGGAACTTGGGGAGAACAAGTTGAAGGGGCCACTTTTCAGGCATATAAATTTGACTTCTCCTGTAGTGTTATGTATGAGGTTTATTCTGGATTTGTTCTTCTGATAGAATCAAAACTTGATGATGACGTGGGCAATTTTGAACTTGAACTTTATCTACTCTCAAAAACGGTTAAGGCTTCTGTGTCTTTTGGCGGGGAGGTTCATTTGGATGCTGAACAGATAGCGAAAGCAAAGTGCTTTCAGGAGCTTTTCTTCAACGGATTGTTTGGGAGACTGTTCATTGGGTCAAAATCAACTGGAAAAAAGAGGGATTTTTTACTTCAGAAAGATACAAAACCTCTTTGGATTTCATCAAACATGTATCTGCTTCTACCAGTGGATTTGCCGGATGATTCAACTCATGATTTATGGAAAATACATTGGAGAGCAATTGATTCCTGTGTGTCTGTGGTTGAGTTTTTGAAGAAAAGTTCATCTTTGGATGCTGAAAGAAATTGTGGTGCTGATGCCATATCAGATTCATCACCTTCTAGAAATAACTCTGCTGAAACTGGAAGCAATGCTGCAAGTTTAATTCACTTTGCAAATTGTGTTCTAGATGTTCATTCCTTGAAGGACAGGGTGGTATTGGCTATTCATACTGGAAGAATCTACTCAATCGTTGAAGTTGTGAGTAATACATCTGCTGAGAGCCCTTTTGATGGGAATAGTGACAAAGCACCACCTGATTACATTACCTTTGGGGACTATTTCAACAAAAGGTACGGAATTTCGCTAATTTTTCCAAAACAGCCTCTGTTGCGTTTAAAGCAAAGTCATAATCCTCACAATCTACTTGTCAACTTTAAGGATGAAGGCAATACCAGCGATAAGTTGCTATCTGGTCCTGCATTCAGAAAGCCACAAATGCATGTCCATATGCCTCCTGAACTTCTGCTTAGCATGGATGTCCCAAAGGGGGTTTTGAAGTCTTCATACTTGCTGCCATCTTTGATGCACCGTTTAGAATCTTTGATGTTAGCCAGCCAGCTTAGGAAGGAGATTAATTATCATTCGAACAGCCTCTGTATATCAAGCTCTTTGATTTTGGAAGCACTTACAACCCTTGGAAGTTGTGAGAGTTTTTCCTTAGAGCGGTTAGAATTGCTTGGTGATTCAGTGCTGAAGTATGCTGTGAGCTGCCACCTCTTTCTCAAGTTCCCTGAAAAACATGAAGGGCAGTTATCTTCTAGGCGGCAACAGGTTATCTGTAATGCAACCTTACATGCTTTGGGAACAAAGTGCAGGTTACAGGGGTACATACGTGATTCTGCATTTGACCCACGTCGGTGGGTGGCACCAGGACAAGGTACTAATCGTCCTGTTCCTTGTAAATGTGGAGTGGATACAGTAGAAGTTCCTTTGGATGAAAAGTTCTGCACTGAAGATCCAAAAGTTGTTTTGGGTAAGTGCTGTGATAAGGGACACAGGTGGGTGGTTTCAAAAACTATAGCGGACTGTGCTGAAGCCCTTATAGGGGCCTATTATGTTGATGGTGGAATCATTGCTGCACTCCATGTGATGAAGTGGCTTGGAATTGATGCTGATCTGGACGTAGCATTAGCTGTTGATGCAATTACTTCTGCATCTCTGAGATCCTGCCCTTTGGAAGATACTGAGATTGCAACCATCGAGTCAAAAATTGGATACGATTTTGCTGTCAAAGGATTATTGGTGGAGGCTATAACACACACATCTGATCAAGAACTTGGTTTTAATTACTGTTACCAGTGTCCATTGTGTAGAGCTTGGAATGACGATTTCAATGCAATTTGA 3966 41.17 MIPRRAAAYSAATFDMHEPEEENRDGARKRRFSELEPGVASDQYNFNQPMDEGFIPRRYQMEVFEVGMRRNTIAVLETGSGKTMIAVMLMKEIGKAMKSSGDKKFIIFLAPTVHLVHQQFNVIKVHTDFEVAEYYGAMGVDDWNMNRWDKETSERDVLVMTPQILLDALRKAYFRLGSVCLMIIDECHRATGNHPYTKIMKEFYHKSDNKPKIFGMTASPVIRKGVSSSSDCECQIADLESILDCQIYSIEDKKEVEIYVPSAKEICIFYEPAKPQTVELKAKIEALWSKFDALLSNSQGAMQGHYKDVDSKLKALKKRLSSDHLKIAYCLDELGVMCAYEAIKVLLENVKVPNEESEVYRESFLQYKHFLEEALLVIGESFPLGNENIPKCGFDFWKAVDLGYISPKLFELLQLFESFGVSRQVLCLIFVERIVAANVIERIVKKVANLSHFTVSYVTGCNASVGALAPKVQKETLELFCHGKLNLLFSTDVVEEGLHVPNCSFVVRFDLPKTVRSYVQSRGRARQNNSQYILLLERGNLKQRAQLFDVIRSDRSMTDAATSRDPDACILKPFSVVETDCYTVEATGASVTADSSVGLIYQYCKKLPGDKYFSPKPIFQLSYGEGSYECQLTLPPTAAFQTIVGPSTRNSNLSKQLVCLEACKKLHQMGSLNDHLLPSVEERSEFDMGLKSNASTSRAGSTKRKELHGRSAIRALAGTWGEQVEGATFQAYKFDFSCSVMYEVYSGFVLLIESKLDDDVGNFELELYLLSKTVKASVSFGGEVHLDAEQIAKAKCFQELFFNGLFGRLFIGSKSTGKKRDFLLQKDTKPLWISSNMYLLLPVDLPDDSTHDLWKIHWRAIDSCVSVVEFLKKSSSLDAERNCGADAISDSSPSRNNSAETGSNAASLIHFANCVLDVHSLKDRVVLAIHTGRIYSIVEVVSNTSAESPFDGNSDKAPPDYITFGDYFNKRYGISLIFPKQPLLRLKQSHNPHNLLVNFKDEGNTSDKLLSGPAFRKPQMHVHMPPELLLSMDVPKGVLKSSYLLPSLMHRLESLMLASQLRKEINYHSNSLCISSSLILEALTTLGSCESFSLERLELLGDSVLKYAVSCHLFLKFPEKHEGQLSSRRQQVICNATLHALGTKCRLQGYIRDSAFDPRRWVAPGQGTNRPVPCKCGVDTVEVPLDEKFCTEDPKVVLGKCCDKGHRWVVSKTIADCAEALIGAYYVDGGIIAALHVMKWLGIDADLDVALAVDAITSASLRSCPLEDTEIATIESKIGYDFAVKGLLVEAITHTSDQELGFNYCYQCPLCRAWNDDFNAI 1321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23084379 23112945 - CcPI632755_08g011290.1 Cco08g1129 185603

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1129 1321 SMART riboneu5 1077 1250 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cco08g1129 1321 Pfam Dicer dimerisation domain 596 682 IPR005034 GO:0016891(InterPro)
Cco08g1129 1321 ProSiteProfiles Ribonuclease III family domain profile. 1058 1230 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cco08g1129 1321 Gene3D Ribonuclease III domain 1052 1241 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cco08g1129 1321 ProSiteProfiles PAZ domain profile. 907 1033 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cco08g1129 1321 FunFam Endoribonuclease dicer-like 1 399 562 - -
Cco08g1129 1321 Pfam Ribonuclease III domain 1095 1230 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cco08g1129 1321 FunFam Dicer-like 104 1053 1242 - -
Cco08g1129 1321 SMART helicmild6 441 528 IPR001650 -
Cco08g1129 1321 SMART PAZ_2_a_3 865 1057 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cco08g1129 1321 FunFam Dicer-like 104 909 1030 - -
Cco08g1129 1321 Gene3D Dicer dimerisation domain 591 688 IPR038248 -
Cco08g1129 1321 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 411 567 IPR001650 -
Cco08g1129 1321 Gene3D paz domain 907 1030 - -
Cco08g1129 1321 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 596 686 IPR005034 GO:0016891(InterPro)
Cco08g1129 1321 FunFam Endoribonuclease dicer-like 1 591 687 - -
Cco08g1129 1321 Gene3D - 52 289 IPR027417 -
Cco08g1129 1321 SUPERFAMILY RNase III domain-like 1049 1249 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Cco08g1129 1321 Pfam Helicase conserved C-terminal domain 422 525 IPR001650 -
Cco08g1129 1321 Gene3D - 402 560 IPR027417 -
Cco08g1129 1321 Pfam PAZ domain 920 1050 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Cco08g1129 1321 CDD RIBOc 1077 1241 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Cco08g1129 1321 CDD DEXHc_dicer 54 252 - -
Cco08g1129 1321 SMART ultradead3 52 259 IPR014001 -
Cco08g1129 1321 Pfam DEAD/DEAH box helicase 58 220 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Cco08g1129 1321 SUPERFAMILY PAZ domain 919 1029 IPR036085 GO:0005515(InterPro)
Cco08g1129 1321 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 544 IPR027417 -
Cco08g1129 1321 PANTHER DICER-RELATED 70 1307 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Cco08g1129 1321 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 220 IPR014001 -
Cco08g1129 1321 FunFam Endoribonuclease dicer-like protein 51 290 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1129 K11592 - - csv:101205038 2383.6
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1048 Cco-Chr3:18221320 Cco08g1129 Cco-Chr8:23084379 8.40E-42 dispersed
Cco06g1396 Cco-Chr6:24426425 Cco08g1129 Cco-Chr8:23084379 6.60E-154 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g179 . . . . Bpe02g01567 . . . . . . . . . . . . Bhi04g01135 . . . . . . . . . . . . . . . Cone17ag0954 Cone20ag0298 . . . Cme03g01722 . . Bda01g01354 . . Bpe04g00456 Bma01g00904 . . . . . . . Car05g00890 . . . . . . . . . Cla08g00979 Cam08g1428 Cec08g1006 Cco08g1129 Clacu08g1133 . Cre08g0917 Lsi08g00826 . Chy03g00649 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006008 1 2 1 1 1 1 1 1 1 1 1 1 2 1 3 1 1 2 1 2 1 1 1 2 2 1 1 1 1 1 38