Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1135 ATGACTCCAGACGAGTCGTCACTTCTAAACCCTAGACGAACTTCTACGGCTTTCAACTTCTTTCCAAATTGCATATCCTCATTCTCACCTGCATTTTCTCAAACACCTTCAGGACCATCCAGGAGAAGGCACGCTGAATTCCTCCCTCCATGTAATTTTCTTCGCGACCTCCATGATTCTTTCGCATCAACTACTGAAAGATGCATCAGATTTTTTCACTCATTGGCTTCTGAGAATCCATTTCTCAATAAATTGCTCTCGTTGCATTCTGAGTTCCAGAGTTTCCGTCACCAGATCCACGGTATGAACTCCAGGAATTTCCGAGCTCTCTCCAGTCACAATTTTGCTGCAGTTTTGCCGGGGGATTCTGTGGCAGGACTTGTAGTCGCTAATGGTATTCAAAATTTCTTGAGCCTCTACAATACACTGTTGGTCGTCAGACTAGTTTTGACTTGGTTTCCAAACACACCTCCCGCCATTGTTAGTCCACTAAGCACTTTATGCGACCCATATTTGAACATATTTCGTGGGATTATCCCACCTCTTGGAGGGACACTTGATTTATCTCCAATATTGGCATTCCTGGTCTTAAATGCCTTTACCAGCACTGCCGCTGCACTTCCTGCTGAACTTCCGGTCCCAAATTCGTCTCTTGCAAATCCTACTCCTTTAGAAGGGTCTGTTGATCTTACAACATCACAAAAGAAATGGATGAGAAGGCTTCAGGGAAGTGGCAAAAATAATGCCGATGCTGCTCAATAG 762 44.36 MTPDESSLLNPRRTSTAFNFFPNCISSFSPAFSQTPSGPSRRRHAEFLPPCNFLRDLHDSFASTTERCIRFFHSLASENPFLNKLLSLHSEFQSFRHQIHGMNSRNFRALSSHNFAAVLPGDSVAGLVVANGIQNFLSLYNTLLVVRLVLTWFPNTPPAIVSPLSTLCDPYLNIFRGIIPPLGGTLDLSPILAFLVLNAFTSTAAALPAELPVPNSSLANPTPLEGSVDLTTSQKKWMRRLQGSGKNNADAAQ 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23182275 23184087 + CcPI632755_08g011350.1 Cco08g1135 185609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1135 253 PANTHER YLMG HOMOLOG PROTEIN 2, CHLOROPLASTIC 16 212 IPR003425 GO:0010020(PANTHER)|GO:0016020(InterPro)|GO:0090143(PANTHER)
Cco08g1135 253 Pfam YGGT family 136 200 IPR003425 GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1135 K02221 - - csv:101210772 459.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1539 Cco-Chr7:29408414 Cco08g1135 Cco-Chr8:23182275 3.50E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g164 Blo01g01444 . . . . Bpe02g00509 . . Cmo05g00425 . . Cma05g00413 . . Sed08g1804 . . Bhi04g01517 Tan02g1581 Cmetu03g0930 . Hepe08g1436 . Lcy13g2222 . . . . . . . . . Cone17ag0947 Cone20ag0290 . . . . . . . . . . . . . . . . . . Car05g00348 Cpe11g00353 . . . . . . . . Cla08g00985 Cam08g1434 Cec08g1012 Cco08g1135 Clacu08g1139 . Cre08g0923 Lsi08g00831 . Chy03g00655 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007806 1 1 1 0 1 1 1 1 1 1 3 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 34