Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1144 ATGGACGGCGGTGCTCCGTACAATCCACGTACCGTGGAAGAGGTGTTTAGGGATTTCAAGGGCCGTAGAGCTGGTTTAATTAAGGCTCTAACTACTGATGTTGAAGAGTTCTACCAGCAATGTGATCCTGAGAAAGAAAATCTTTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTACCTGCGGAAGAGGTGCCTCCGGAGCTTCCAGAACCTGCGCTGGGCATAAATTTTGCTAGAGATGGGATGCAAGAAAAGGACTGGCTATCTTTGGTTGCAGTGCATAGTGATGTTTGGCTGCTCTCTGTGGCATTTTATTTTGGAGCTAGGTTTGGATTTGATAAGACAGATAGGAAGCGTCTATTTAATATGATAAATGATCTTCCAACAATATTTGAAGTGGTGACAGGGACAGTCAAAAAACAAGTTAAGGATAAATCATCAGTTTCAAATCATAGCAGTAATAAATCTAAATCAAATCCAAAGCGGAGTTCCGAACCTCAAATAAAAAATACAAAAGCTGTTCAATCGAAGGACGAGGACGAGGAAGGTTTGGAAGAGGAAGACGAGGAAGAACATGGAGAAACACTTTGTGGAGCTTGTGGAGAGAATTATGCATCTGATGAGTTTTGGATTTGCTGTGACATATGCGAGAGATGGTTCCATGGGAACACGTGTGGATACCTTTCTCTATTGTACGGGATGTTCGGGTCACGGGTGCAACAAGGAGAGATTTGGTTCGTTTGTGCAGTTTCGTTATGCGTTGAAGGCTTGAGGGGCCATCTTTTGATAAACTCAGGAGGACGATTCTTTGTTCCATGA 828 43.24 MDGGAPYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDVWLLSVAFYFGARFGFDKTDRKRLFNMINDLPTIFEVVTGTVKKQVKDKSSVSNHSSNKSKSNPKRSSEPQIKNTKAVQSKDEDEEGLEEEDEEEHGETLCGACGENYASDEFWICCDICERWFHGNTCGYLSLLYGMFGSRVQQGEIWFVCAVSLCVEGLRGHLLINSGGRFFVP 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23295016 23301660 + CcPI632755_08g011440.1 Cco08g1144 185618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1144 275 PANTHER CPG BINDING PROTEIN 8 227 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cco08g1144 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 233 IPR013083 -
Cco08g1144 275 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cco08g1144 275 MobiDBLite consensus disorder prediction 145 193 - -
Cco08g1144 275 MobiDBLite consensus disorder prediction 145 174 - -
Cco08g1144 275 SUPERFAMILY FYVE/PHD zinc finger 189 235 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1144 Cco-Chr8:23295016 Cco09g0081 Cco-Chr9:735488 1.20E-95 dispersed
Cco08g1144 Cco-Chr8:23295016 Cco11g0181 Cco-Chr11:1797278 7.20E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1144 K26274 - csv:101208889 397.512