Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1146 ATGGCAGAGAGTATTAGAAAGAGGCTTGATGAAGCCGCCATTGAAGGAAACGTAGCAACGTTGTTAGAATTACTCCAACAAGATCCAATGTTACTGGCCAGACTCAACCTCAACGACTTCAACGAGACTCCACTGCACGTGGCTTCTCTTCTTGGTCACGTGACATTTGTGGATGAGATTCTCAAGCGAAGGCCTCAGCTGGCCAGAGATTTGGATTCTCGCCGTTGTTCCGCCCTCCACTTGGCCGCCGCCGAGGGCTCTTTAGACATTGTGCAAATTCTGCTGCGAGTTGATCCTGATATGTGTTCTATCTGCAATGAAGACGGCCGGAATCCTATTCATCTCGCCGCCATGAGAGGCCGGGTTGATGTCTTGGCCGAGCTCGTTCGAGTAAGACCGGCAGCCGCTCGAACTGCCGTGGACGGCGGGGGAACGGTGTTGCATTTATGTGTGAAGTTCAACCAGGTGGAGGCTTTGAAGATGTTGATTGAAACTATGGAAGTGAAAGAGAAAGACAATGATTTTATTAATACTCAGGATGATTATGGCTTCACTATCCTTCATTTAGCAGTCTCACACAAACAACTTCAGACCGTAGAATATCTAATCAACCATACTGGAATCGAAGTAAATGCAAAAACCTCAAATGGGTTAACACCTCTAGACATTCTAACTCAAAGCCAAAGAGATTTAAAGGACTTGAACATTGCAGAGACTCTCACAGCCGCCAATGCCATCCGAACCACAAACAAAAAACCACCGCCGCCGCCGCCGCCGTCTTCTTGTGTCAAGATCAAAAACGAAAAGAGTTGTCAAACATGGAGATGGTTTTTTTCGGCCTTATTCCACAATGGGGATTGGTGGTTTATGAACGAAAAAAGCGAGTGGCTAATGAAGCAAGAGTCATTAATGGTTGTAGCATCCTTAATTGCAACAATGGCTTTTCAAGCCGGAGTGAACCCTCCCGGCGGCATTTGGCAAGACGACAAAGCGTCGGGAAATCCAAGACAGACTGCTGGAACGTCGGTGATGGCCGGAAAAGACAAAGCAACATACAATAAATATCTTGTGTCTAACACAGTAGGGTTCATGACTTCGTTCATAGCAATTGTGATGATTCTGATTGGGTTGCCTCAAAAACGTATTTTCATGAGGGTTTTGATCATGACAATGTGTGCTGCTGTGAGTGCCATGGCTTTCACTTATGGATATTCCATAAAGTTTTTCACGCCACTACCACCACCACCAACTGAAGCCTCCAACTCCACTTCTCCGCCTCCATCTCCACTTACCATCTGGGGTACTCCGCGCCCCAAGTCGGACTCGGTCATCTCTTTGATTTCCATTATTGTGGCCATAGTGGTCACTTCTTCCATGGGGATTTTCTTGGTCGCCAAGCTCTTCTACGTTCATTCTCGACAGAATAAACCTACTGGACACCCACTTCCTCGCCCATGA 1458 46.91 MAESIRKRLDEAAIEGNVATLLELLQQDPMLLARLNLNDFNETPLHVASLLGHVTFVDEILKRRPQLARDLDSRRCSALHLAAAEGSLDIVQILLRVDPDMCSICNEDGRNPIHLAAMRGRVDVLAELVRVRPAAARTAVDGGGTVLHLCVKFNQVEALKMLIETMEVKEKDNDFINTQDDYGFTILHLAVSHKQLQTVEYLINHTGIEVNAKTSNGLTPLDILTQSQRDLKDLNIAETLTAANAIRTTNKKPPPPPPPSSCVKIKNEKSCQTWRWFFSALFHNGDWWFMNEKSEWLMKQESLMVVASLIATMAFQAGVNPPGGIWQDDKASGNPRQTAGTSVMAGKDKATYNKYLVSNTVGFMTSFIAIVMILIGLPQKRIFMRVLIMTMCAAVSAMAFTYGYSIKFFTPLPPPPTEASNSTSPPPSPLTIWGTPRPKSDSVISLISIIVAIVVTSSMGIFLVAKLFYVHSRQNKPTGHPLPRP 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23312216 23314993 - CcPI632755_08g011460.1 Cco08g1146 185620

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1146 485 ProSiteProfiles Ankyrin repeat region circular profile. 74 101 - -
Cco08g1146 485 SMART ANK_2a 142 171 IPR002110 GO:0005515(InterPro)
Cco08g1146 485 SMART ANK_2a 216 251 IPR002110 GO:0005515(InterPro)
Cco08g1146 485 SMART ANK_2a 182 212 IPR002110 GO:0005515(InterPro)
Cco08g1146 485 SMART ANK_2a 40 69 IPR002110 GO:0005515(InterPro)
Cco08g1146 485 SMART ANK_2a 74 103 IPR002110 GO:0005515(InterPro)
Cco08g1146 485 SMART ANK_2a 108 137 IPR002110 GO:0005515(InterPro)
Cco08g1146 485 ProSiteProfiles Ankyrin repeat region circular profile. 108 130 - -
Cco08g1146 485 PANTHER HOMEOBOX PROTEIN WARIAI 5 452 - -
Cco08g1146 485 ProSiteProfiles Ankyrin repeat profile. 108 130 IPR002110 GO:0005515(InterPro)
Cco08g1146 485 ProSiteProfiles Ankyrin repeat profile. 74 101 IPR002110 GO:0005515(InterPro)
Cco08g1146 485 Pfam Ankyrin repeats (many copies) 177 223 IPR002110 GO:0005515(InterPro)
Cco08g1146 485 Gene3D - 3 254 IPR036770 -
Cco08g1146 485 Pfam Domain of unknown function 299 405 IPR026961 -
Cco08g1146 485 Pfam Ankyrin repeats (3 copies) 79 171 IPR002110 GO:0005515(InterPro)
Cco08g1146 485 SUPERFAMILY Ankyrin repeat 10 227 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1146 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1146 Cco-Chr8:23312216 Cco08g1148 Cco-Chr8:23324326 5.70E-13 dispersed
Cco08g1145 Cco-Chr8:23305308 Cco08g1146 Cco-Chr8:23312216 4.20E-08 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g136 . . . . . . . . Cmo05g00431 . . Cma05g00417 . . Sed11g0850 . . Bhi04g01495 Tan02g1603 Cmetu03g0055 . . . Lcy13g2203 . . . . . . . . . . . . . . . Blo17g00277 Blo18g00268 . . Bpe14g00571 . . Bma02g00541 . . . . . . Car05g00897 Cpe11g00359 . . . . . . . . Cla08g00998 Cam08g1445 Cec08g1023 Cco08g1146 Clacu08g1147 . Cre08g0934 Lsi08g00848 . Chy03g00669 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002621 0 1 10 2 1 1 1 1 1 1 1 1 1 3 1 2 1 0 1 1 1 1 3 6 4 4 2 1 3 2 58