Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1153 ATGGAGGAAATGTCCCCGGCGGTTGTGGTGCCATTTAGGTTAGGTAATTCAGTCTGTGATAACCCCAACATGGCAACTCCCATGGATATCACAAGACTTAAGCTAATGGCAGATACTGCTGGTTTGTTATCTGATTCTGTGACTAAGGCTTCTGATGACCTGACTGAAGTAGGTTCTGATGATTGTAAGAGTTCTAATGGGGAGGAAGAGGTTGGTATCACTACAGTTTCGGGTATGAATGACAAGTGTGAAGGAGTTCCATTTTCAGTTGTGTTATCTCAAAATAATAGCAGTTGGGTTCCGGCAGATGAGTCGATATCCCATGGAAGTGAGGAAGATGATTCTTTATCTCTAGAGGGCGATCACATTTATGATAGCTCTTGTTCACATTCAGTGATTAGTGAGAATAGCAGCATTTGTGGTGATGATTTTTTAGGTTCTGAGGTGTCTTCTTTTGAAGCATTTGATTCCATCAGCAATCCAAAGGACATTAGCAGCGTTGAGATTGCAGCTAAAGCCAATATTGAAGAAACTAATGTTGAAAGTCTTGACTCTCAGATTGCGAGTTCTTCTTCTGCAGCAGCTAGCCTTGAAGAAGATGTTGGAGATGGGCTAGGCACTGAAGCATGTAATAACACGGTTCTTCAGCTGCCTCTTGAGAAGAAGGCAAGCGAACCAGTCAGTCGAAGTGTTTTTGAAGTAGATTGTGTTCCCCTTTGGGGATTTACATCGGTTTGTGGAAGAAGACCCGAGATGGAAGATGCAGTGGCAACTGTACCTAGGTTTTCAGAACTTCCTGTCCAAATGCTTGTTGGCGACCGGGTTCTTGATGGCTCAAACAAGGCTATAGCTCACCAAACCGTTCATTTTTTTGGGGTTTATGATGGTCATGGTGGCTCTCAGGTCGCAAATTTTTGTCGTGAACGTATGCATTTGGCTTTATCTGAGGAGATAGAACTTGCTAAGCAAGAAATAGCTGTTGGTAATGTTAAGGATAATTGCCAAGAGCTATGGAGAAAGGCATTCACCAACTGTTTTCTTAAAGTTGATGCTGAAATTGGAGGGGGACCTGGTGTTGAGCCTGTTGCGCCAGAAACTGTAGGCTCCACTGCTGTTGTTGCAATTATCTGTGCCTCTCACATTATTGTTGCAAACTGTGGAGACTCAAGAGCAGTTCTTTGTCGTGGGAAGGAGCCAATGGCATTGTCTGTGGATCATAAACCAAACAGAGAAGATGAATATGAAAGGATTGAGGCTGCAGGAGGAAAGGTCATACAGTGGAACGGGCATCGTGTTTTTGGTGTTCTTGCAATGTCGAGATCCATTGGTGATAGATACTTGAAACCATGGATCATCCCAGAGCCAGAAGTGATGTTCCTCCCTCGGGCAAAAGACGACGAATGCCTTGTTCTAGCGAGTGATGGTTTATGGGACGTGATGACCAATGAAGAGGTATGCGACCTGGCTCGAAGACGAATCCTACTTTGGCACAAGAAGAATGGCGTTAGTTTGCCTTCTGAGAGGGGGGTGGGGATTGATCCCGCAGCCCAAGCAGCCGCAGAATACCTCTCAAACCGAGCTCTTCAAAAGGGCAGCAAAGATAACATTACGGCGCGAGGACAAGAAGCGACTTCGTTGGCCGAGAAATTTCCAAGAACCGCCTCGTCGTTCAGGCCGCTGTTGCTTCGCCGACGGCCATTTGATGGAGTGGTAATATCTCAATCAATGGGAATCAAGAGAGAGAGTAAAAGCTCTGCTTCTGCAACATCGCCGTGTGCTGATTTCAGGGCTGCATATCACAATTGTTTCAATCGATGGTACTCGGAGAAGTTTGTAAAAGGTCATTGGGATGAAGAACCCTGCGTCTCCGAGTGGCAAAAGTACAGAGCTTGTCTCTCTGAGCATTTGGATGATAAGAAGTTAAAGCGTTTCTTGGAAGAGGAAACGATTGTTCATTCTTCCATGAAAGCTGATGGGAGTCAAGAATCAAGATAG 1995 45.16 MEEMSPAVVVPFRLGNSVCDNPNMATPMDITRLKLMADTAGLLSDSVTKASDDLTEVGSDDCKSSNGEEEVGITTVSGMNDKCEGVPFSVVLSQNNSSWVPADESISHGSEEDDSLSLEGDHIYDSSCSHSVISENSSICGDDFLGSEVSSFEAFDSISNPKDISSVEIAAKANIEETNVESLDSQIASSSSAAASLEEDVGDGLGTEACNNTVLQLPLEKKASEPVSRSVFEVDCVPLWGFTSVCGRRPEMEDAVATVPRFSELPVQMLVGDRVLDGSNKAIAHQTVHFFGVYDGHGGSQVANFCRERMHLALSEEIELAKQEIAVGNVKDNCQELWRKAFTNCFLKVDAEIGGGPGVEPVAPETVGSTAVVAIICASHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYERIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFLPRAKDDECLVLASDGLWDVMTNEEVCDLARRRILLWHKKNGVSLPSERGVGIDPAAQAAAEYLSNRALQKGSKDNITARGQEATSLAEKFPRTASSFRPLLLRRRPFDGVVISQSMGIKRESKSSASATSPCADFRAAYHNCFNRWYSEKFVKGHWDEEPCVSEWQKYRACLSEHLDDKKLKRFLEEETIVHSSMKADGSQESR 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23347531 23352068 - CcPI632755_08g011530.1 Cco08g1153 185627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1153 664 ProSitePatterns PPM-type phosphatase domain signature. 290 298 IPR000222 GO:0043169(InterPro)
Cco08g1153 664 SMART PP2C_4 229 541 IPR001932 -
Cco08g1153 664 FunFam Protein phosphatase 2C 16 227 539 - -
Cco08g1153 664 Pfam Uncharacterised protein family (UPF0203) 587 648 IPR007918 -
Cco08g1153 664 Gene3D - 226 539 IPR036457 -
Cco08g1153 664 SUPERFAMILY PP2C-like 234 538 IPR036457 -
Cco08g1153 664 CDD PP2Cc 241 538 IPR001932 -
Cco08g1153 664 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 589 639 - -
Cco08g1153 664 PANTHER PROTEIN PHOSPHATASE 194 538 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0009788(PANTHER)|GO:0035970(PANTHER)
Cco08g1153 664 ProSiteProfiles PPM-type phosphatase domain profile. 239 543 IPR001932 -
Cco08g1153 664 Pfam Protein phosphatase 2C 262 536 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0051 Cco-Chr7:472383 Cco08g1153 Cco-Chr8:23347531 4.10E-19 dispersed
Cco07g1464 Cco-Chr7:28756270 Cco08g1153 Cco-Chr8:23347531 9.30E-142 dispersed
Cco08g1153 Cco-Chr8:23347531 Cco11g0681 Cco-Chr11:7413100 7.70E-45 dispersed
Cco08g1153 Cco-Chr8:23347531 Cco03g0125 Cco-Chr3:1230429 2.20E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1153 K14497 - csv:101207918 994.186