Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1154 ATGTCTCCCTCCTCCTATCCACCAGAAGATGGGATTCCTTTGAACACCACGGCGGTGGCCATTGACAAGGATAAGAACAGCCATCACGCCGTCCGCTGGGCTATTGATCATCTGGTCATTAGCAATCCACTTATCATTCTCATCTACGTTAGGCATAAAGCTAATCAACATCAGGGAGCGAGCGATTCTGAAAATGGTGAAACTGATGCCCAGCAGCTGTTTATTCCTTATCGTGGATATTGTGCTCGTAAAGGGGTTCAGCTGAAGGAGGTTGTTCTTGACGATACTGATATTCCCAAAGCGCTTGTTGACTACGTTCACAAGAATTGCATCAACAATTTTGTAGTTGGAGCTTCAACAAGGAGTGCTTTAGCAAGGAAATTTAAAGGTCCTGATGTTCCAACCAGCATAATAAAAACTGCCCCAGAATTTTGTTCTGTTTATGTAATATCAAAAGGGAAGATAATATCTGCCAGGGCAGCTCTTCGGCCAGTGGCTAATACTGCCACGCCACCAAGACAACCGTCGCCGCTTGGAGTTCAGCCAAATGTTCAACCAGATAGCAGCAACGAACCGGAAAATGGAGCCAAAGGGCAACCAGCAAAGGAAGGATGGAAAAGTGCAGGTACAGAAAGAATGCTCGCTGAAAGGAATAGTGGTGCAAAACCAGCAAAAGCGTTGACCCGTGAGAGGCCAAAAACTTCTCCGACTAATATATCAATGGAAAATATAGAGGTTCCAAATCGAGGGTCTAGGTCTTCATTTAGTCGTGATTCGATATCTGATGACAATATGCTGACTGCACAGATGGCCTTTGGTTCAATGGACGTGACTGCTCAAAATTTAGATTTCAGTGGCTCAAATTTGTCAGTGGACTCTGCTTCCACACAATCTACTCGGGAACTAGAGGCTGAAATGAAAAGATTGAAGCTGGAATTAAAGCAAACCATGGATATGTATAGCTCAGCCTGCAAAGAGGCAATCTCAGCCAAGAACAAGGCGAGAGAACTTAGTCAGTGGAAGCAAGATGAGGCACGTAAGTTCGAGGAAGTCAGGCTAGCTGAAGAGGCTGCTCTCGCTATTGCTGAGATGGAGAAAGCCAAGTGCAAAGCTGCCATTGAAGCAGCAGAGGCAGCACAAAAGCTAGCCGAAAGAGAAGCCCAGAGAAGAAAACAGGCTGAAATGAAAGCCAGACGAGAGGCAGAAGAGAAAAAACGAGCATTGAATGCTCTAGCTCAGAATGACGTCCGATACAGAAAATATACTATAGAGGAGATTGAGGAATCTACTGAAAAGTTCTCTGAAAAATTGAAGATTGGAGAAGGTGGATACGGTCCTGTTTATGGTGGCAAACTCGATCATACAGCTGTTGCTATTAAGGTTTTAAGACCTGACGCTGCTCAAGGACGGAAGCAATTCCAACAAGAGGTTGAGGTCCTCTGTTGTATTAGACATCCAAACATGGTCCTTCTTCTTGGGGCATGCCCCGAGTATGGTTGCTTGGTATATGAGTACATGCATAATGGGAGCTTAGAAGACAGACTTTTCCGGAGAGGGAATACTCCTCCATTATCTTGGAGACGACGATTCAAAATAGCTGCTGAAATTGCAACCGCTCTCCTTTTTCTTCACCAAGCAAAGCCAGAACCGCTCGTTCATAGGGACCTTAAACCAGCTAACATTCTCCTGGACCGCAATTATGTGAGCAAAATCAGTGATGTTGGCCTGGCCCGATTAGTCCCACCTTCTGTAGCTGATCAAGTCACACAATATCACCTGACTTCAGCAGCTGGCACATTTTGTTACATTGATCCCGAGTACCAACAAACAGGGCAGTTAACGACAAAATCAGATATTTACTCGTTTGGAATAATGTTACTTCAAATTATTACTGCCAAGCCTCCAATGGGTTTGGCTCACCATGTGCAAAGGGCTATTGAGAAAGAGAGGTTTGATGAGATGCTGGATCCTACAATTTCAGATTGTCCACTGGAGGAGGCCATAAATTTTGCAAACTTGGCATTGAAGTGCGCTGAACTGAGGAAGAGAGACAGGCCAGATCTTGGAACAGTTATAGTTCCAGAGCTCAACAGGTTAAGAGATATTGGGAGGAGTTCTGACAAACGTGAAAGCCGAAGTAACTTCCCACGCTCTGCTGCATCAAGTTCCAGTTCAAGGCCGCAGTCATCAAATGAGGATTCCAGAGTTAGTTATACTGATGAAGGAATTTAG 2232 44.85 MSPSSYPPEDGIPLNTTAVAIDKDKNSHHAVRWAIDHLVISNPLIILIYVRHKANQHQGASDSENGETDAQQLFIPYRGYCARKGVQLKEVVLDDTDIPKALVDYVHKNCINNFVVGASTRSALARKFKGPDVPTSIIKTAPEFCSVYVISKGKIISARAALRPVANTATPPRQPSPLGVQPNVQPDSSNEPENGAKGQPAKEGWKSAGTERMLAERNSGAKPAKALTRERPKTSPTNISMENIEVPNRGSRSSFSRDSISDDNMLTAQMAFGSMDVTAQNLDFSGSNLSVDSASTQSTRELEAEMKRLKLELKQTMDMYSSACKEAISAKNKARELSQWKQDEARKFEEVRLAEEAALAIAEMEKAKCKAAIEAAEAAQKLAEREAQRRKQAEMKARREAEEKKRALNALAQNDVRYRKYTIEEIEESTEKFSEKLKIGEGGYGPVYGGKLDHTAVAIKVLRPDAAQGRKQFQQEVEVLCCIRHPNMVLLLGACPEYGCLVYEYMHNGSLEDRLFRRGNTPPLSWRRRFKIAAEIATALLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSVADQVTQYHLTSAAGTFCYIDPEYQQTGQLTTKSDIYSFGIMLLQIITAKPPMGLAHHVQRAIEKERFDEMLDPTISDCPLEEAINFANLALKCAELRKRDRPDLGTVIVPELNRLRDIGRSSDKRESRSNFPRSAASSSSSRPQSSNEDSRVSYTDEGI 743
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23362529 23366188 + CcPI632755_08g011540.1 Cco08g1154 185628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1154 743 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 149 - -
Cco08g1154 743 CDD STKc_IRAK 439 699 - -
Cco08g1154 743 MobiDBLite consensus disorder prediction 702 743 - -
Cco08g1154 743 Pfam Protein tyrosine and serine/threonine kinase 437 691 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g1154 743 Gene3D Transferase(Phosphotransferase) domain 1 506 720 - -
Cco08g1154 743 ProSiteProfiles Protein kinase domain profile. 433 696 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1154 743 Pfam Universal stress protein family 19 148 IPR006016 -
Cco08g1154 743 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 405 505 - -
Cco08g1154 743 FunFam U-box domain-containing protein 51 506 706 - -
Cco08g1154 743 SMART serkin_6 433 696 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1154 743 MobiDBLite consensus disorder prediction 167 242 - -
Cco08g1154 743 MobiDBLite consensus disorder prediction 715 737 - -
Cco08g1154 743 SUPERFAMILY Protein kinase-like (PK-like) 416 691 IPR011009 -
Cco08g1154 743 Coils Coil 359 414 - -
Cco08g1154 743 MobiDBLite consensus disorder prediction 180 195 - -
Cco08g1154 743 Gene3D Phosphorylase Kinase; domain 1 401 505 - -
Cco08g1154 743 ProSitePatterns Serine/Threonine protein kinases active-site signature. 551 563 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g1154 743 Gene3D HUPs 14 152 IPR014729 -
Cco08g1154 743 CDD STK_N 16 153 - -
Cco08g1154 743 PANTHER OS02G0152300 PROTEIN 18 721 IPR051348 -
Cco08g1154 743 Coils Coil 299 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1154 Cco-Chr8:23362529 Cco09g0075 Cco-Chr9:649760 3.40E-182 dispersed
Cco08g1154 Cco-Chr8:23362529 Cco08g1414 Cco-Chr8:26072767 1.30E-197 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87041 PF07714 PK_Tyr_Ser-Thr 1.90E-41 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1154 - - - 0.0