Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1160 ATGGAGGAAGAGGAAACCGGAGAGGCTATCCGGCCGGAATTTCCGACGGGGCGAGTGAAGAAGATAATGAAGCTCGACAAGGATATTGGCAAAGTGAATTCAGAAGCCCTGTTTCTAGTCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCGCTGAGAAGAAACGGAAAACCGTGAAGCTTGAACACATCCGAATCGCCGCCAAAAGGCATCGATCTATTAGTGATTTTCTACTCGATTCGCTTCCTCTTCCTTCTCAGCGGTCGGATGCGCCGGCAAAGGACGAGAATCGCACTCGCACTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAG 423 51.77 MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAPAKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23408389 23408811 + CcPI632755_08g011600.1 Cco08g1160 185634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1160 140 MobiDBLite consensus disorder prediction 90 114 - -
Cco08g1160 140 SUPERFAMILY Histone-fold 12 91 IPR009072 GO:0046982(InterPro)
Cco08g1160 140 MobiDBLite consensus disorder prediction 99 114 - -
Cco08g1160 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 75 IPR003958 -
Cco08g1160 140 MobiDBLite consensus disorder prediction 121 140 - -
Cco08g1160 140 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 106 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cco08g1160 140 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982(InterPro)
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59790 PF00808 CBFD_NFYB_HMF 1.40E-19 CL0012 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1160 - - - 0.0