Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1160 ATGGAGGAAGAGGAAACCGGAGAGGCTATCCGGCCGGAATTTCCGACGGGGCGAGTGAAGAAGATAATGAAGCTCGACAAGGATATTGGCAAAGTGAATTCAGAAGCCCTGTTTCTAGTCTCATGCGCCACCGAGCTCTTCCTCAAGCTTCTCGCTGAAAAATCTGCAGAAGTCGCCGCTGAGAAGAAACGGAAAACCGTGAAGCTTGAACACATCCGAATCGCCGCCAAAAGGCATCGATCTATTAGTGATTTTCTACTCGATTCGCTTCCTCTTCCTTCTCAGCGGTCGGATGCGCCGGCAAAGGACGAGAATCGCACTCGCACTGTCGTTGATAAAGTGGCTCCTGAAGGAACCCGTCGAATCGATGATTTCTTTCGCCGGCCAGCAAAGACAACGTCGGCGGAGACCAACGAGTCATAG 423 51.77 MEEEETGEAIRPEFPTGRVKKIMKLDKDIGKVNSEALFLVSCATELFLKLLAEKSAEVAAEKKRKTVKLEHIRIAAKRHRSISDFLLDSLPLPSQRSDAPAKDENRTRTVVDKVAPEGTRRIDDFFRRPAKTTSAETNES 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23408389 23408811 + CcPI632755_08g011600.1 Cco08g1160 185634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1160 140 MobiDBLite consensus disorder prediction 90 114 - -
Cco08g1160 140 SUPERFAMILY Histone-fold 12 91 IPR009072 GO:0046982(InterPro)
Cco08g1160 140 MobiDBLite consensus disorder prediction 99 114 - -
Cco08g1160 140 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 13 75 IPR003958 -
Cco08g1160 140 MobiDBLite consensus disorder prediction 121 140 - -
Cco08g1160 140 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 9 106 IPR050568 GO:0000976(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Cco08g1160 140 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1160 - - - - 0.0
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco06g1989 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.5 9.0e-89 323.6
Cco09g1471 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 69.4 2.1e-53 206.1
Cco09g1471 . 28 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 70.6 1.2e-48 190.3
Cco06g1989 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 7.3e-43 171.0
Cco09g1471 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.8e-52 202.2
Cco06g1989 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.8e-51 199.5
Cco06g1989 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.6e-38 155.2
Cco06g1989 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 81.4 7.4e-81 297.4
Cco09g1471 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 2.0e-49 193.0
Cco09g1471 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 82.2 2.6e-65 245.4
Cco06g1989 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 4.1e-50 194.9
Cco11g1357 . 1 282 CCAAT-HAP5 Transcription Factor Family AT3G12480 51.0 6.9e-62 234.6
Cco08g1160 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 65.5 8.9e-38 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009175 3 1 1 1 0 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 0 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59790 PF00808 CBFD_NFYB_HMF 1.40E-19 CL0012 Cco TF