Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1172 ATGGACGACGGAGCAGCTTCTCAGCCGGACGACACCGTCATGTCGGAGGCGGCGTCTGTACCACCACCGCAGCACGACCCGGCGGCGCACCAGCAGCATCAGCATCAGCCGCCGTCGATGGGGATGGAAAATATTCCGGCGACTTTGAGCCATGGAGGGAGATTTATTCAGTATAATATCTTTGGTAACATCTTCGAAGTTACGGCCAAGTACAAGCCTCCCATCATGCCTATTGGCAAAGGCGCTTACGGCATCGTCTGTTCTGCTCTCAACTCCGAGACCAACGAGCATGTGGCGATCAAGAAGATTGCTAATGCGTTTGATAACAAGATCGATGCTAAGAGAACTCTTCGTGAGATTAAGCTTCTTCGGCATATGGATCATGAAAACGTTGTTGCAATTAGGGATATCATACCTCCACCTCTTAGGGAAACATTCAATGATGTTTATATAGCATATGAGCTAATGGATACCGACCTTCATCAAATAATTCGTTCAAACCAAGCATTATCGGAGGAGCATTGTCAGTATTTCCTGTACCAGATTCTCCGTGGATTGAAGTACATACATTCAGCTAATGTTCTGCACAGAGATTTGAAGCCTTCCAATCTGCTATTAAATGCCAACTGTGACCTGAAAATATGTGATTTCGGACTTGCTCGTGTTACTTCTGAAACTGACTTTATGACAGAATATGTGGTTACAAGATGGTACCGTGCACCAGAGCTCTTACTTAATTCATCTGATTACACAGCAGCTATTGATGTCTGGTCTGTTGGTTGTATTTTTATGGAACTGATGGATCGGAAGCCATTGTTTCCTGGTAGAGATCATGTGCATCAGTTGCGCTTGCTTTTGGAGCTGATTGGCACCCCATCAGAGGCTGATCTTGGTTTTTTGAACGAGAATGCTAAAAGATACATACGGCAACTACCTCATTACCATCGTCAGTCCTTCACTGAAAAGTTTCCACATGTCCATCCTGCAGCCATTGATCTGGTGGAGAAGATGCTAACATTTGATCCAGGACAGAGAATTACCGTTGAAGATGCTCTTGCTCATCCTTATTTGACTTCATTGCATGACATTAGTGATGAGCCTGTCTGCATGACACCCTTCAGCTTTGATTTCGAGCAGCATGCGCTTACCGAGGAACAGATGAAAGAGCTGATCTATCTAGAGGCGCTTGCATTTAACCCCGAGTGCCTTCATTCAAGACTTGATTCTATAATTCTATTTTCCTCACATCAGGAGCAAATAACTTTTGGGCCAATCAGCTGGATTTTGAAGACAGAGGCCTTCTTAAAACTGAAACCAATGACACCAG 1327 44.76 MDDGAASQPDDTVMSEAASVPPPQHDPAAHQQHQHQPPSMGMENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANAFDNKIDAKRTLREIKLLRHMDHENVVAIRDIIPPPLRETFNDVYIAYELMDTDLHQIIRSNQALSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMDRKPLFPGRDHVHQLRLLLELIGTPSEADLGFLNENAKRYIRQLPHYHRQSFTEKFPHVHPAAIDLVEKMLTFDPGQRITVEDALAHPYLTSLHDISDEPVCMTPFSFDFEQHALTEEQMKELIYLEALAFNPECLHSRLDSIILFSSHQEQITFGPISWILKTEAFLKLKPMTP 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23484820 23492760 + CcPI632755_08g011720.1 Cco08g1172 185646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1172 442 MobiDBLite consensus disorder prediction 1 44 - -
Cco08g1172 442 FunFam Mitogen-activated protein kinase 156 384 - -
Cco08g1172 442 Gene3D Phosphorylase Kinase; domain 1 55 393 - -
Cco08g1172 442 SMART serkin_6 72 357 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1172 442 FunFam Mitogen-activated protein kinase 57 166 - -
Cco08g1172 442 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 65 390 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cco08g1172 442 CDD STKc_TEY_MAPK 65 400 - -
Cco08g1172 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g1172 442 Pfam Protein kinase domain 77 357 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1172 442 ProSiteProfiles Protein kinase domain profile. 72 357 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1172 442 Gene3D Transferase(Phosphotransferase) domain 1 156 384 - -
Cco08g1172 442 MobiDBLite consensus disorder prediction 29 43 - -
Cco08g1172 442 ProSitePatterns MAP kinase signature. 107 210 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1172 442 ProSitePatterns Protein kinases ATP-binding region signature. 78 102 IPR017441 GO:0005524(InterPro)
Cco08g1172 442 SUPERFAMILY Protein kinase-like (PK-like) 77 365 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0210 Cco-Chr3:2174031 Cco08g1172 Cco-Chr8:23484820 7.80E-172 dispersed
Cco06g0350 Cco-Chr6:3933151 Cco08g1172 Cco-Chr8:23484820 8.90E-160 dispersed
Cco08g1172 Cco-Chr8:23484820 Cco08g1664 Cco-Chr8:28095412 5.80E-113 dispersed
Cco01g1793 Cco-Chr1:30641177 Cco08g1172 Cco-Chr8:23484820 2.60E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87042 PF00069 Pkinase 4.40E-73 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1172 K14512 - csv:101204301 791.956