Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1183 ATGGCTGATTCACCTCCTCCCCCTCCCTTCTCCACCGCCGATTCCTCCACTAATTCAACCGACGCTCTTTTCTTCTTCCCTCCCGATTCCGATTCCACCATCCTTACCGAATTCGGATGGAATTTCCACTCTCTTCAACCTCAACAACCTTCTCGATTCCTCCAATCTCACCGGATCGACGCCGATTTGCCTCCAACTTCCACTCCGGTAATCGATGACGCTGCCGGATTACAGAGCCCTGACGCTCCTCTTCCACTCGCCTCTAATCCTTCTTTGTCTTCTAGCTCTAGCGGAGAGCCGACGGAGAAACCGCCTGAGATTATTCCGCGGAAGGTCAAAAAGAAGGGGCAGAAGCGAATTCGGCAGCCACGATTTGCATTCATGACCAAAAGCGAAGTCGATCATCTTGAAGATGGCTACCGGTGGAGGAAATATGGACAAAAGGCTGTCAAGAACAGTCCATTCCCTAGGAGTTACTACAGGTGCACAAACAGCAAATGCACAGTGAAGAAAAGAGTAGAACGGTCTTGTGAAGATCCAAGCATTGTGATAACAACATATGAAGGACAACACTGTCATCACACCGTTGGATTCCCTCGAGGTGGATTAAACATAGCTCATGAAGCTGCTTTTGGGTCTCAATTTTCACCTCAAATCCCACAGTTTTTTTACCCTGATCATCAAACTCACCCACCACCCACAACTAACATTAACCCTCCCCGCACTCCCAATGACCAGCCACACGATTTGGCTCCATCATCATCCTCCAATGCACTATCCTTAGAACAACAAGATCCAACAAACTCAAACCTCCAAGTTCCTTCCGACGAAGGCTTGCTCGGCGCTATCATCCCATCCGCCATGATGCGTAGAACATAA 879 48.92 MADSPPPPPFSTADSSTNSTDALFFFPPDSDSTILTEFGWNFHSLQPQQPSRFLQSHRIDADLPPTSTPVIDDAAGLQSPDAPLPLASNPSLSSSSSGEPTEKPPEIIPRKVKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSCEDPSIVITTYEGQHCHHTVGFPRGGLNIAHEAAFGSQFSPQIPQFFYPDHQTHPPPTTNINPPRTPNDQPHDLAPSSSSNALSLEQQDPTNSNLQVPSDEGLLGAIIPSAMMRRT 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23597915 23602281 - CcPI632755_08g011830.1 Cco08g1183 185657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1183 292 Gene3D WRKY domain 123 189 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1183 292 MobiDBLite consensus disorder prediction 1 26 - -
Cco08g1183 292 MobiDBLite consensus disorder prediction 51 120 - -
Cco08g1183 292 MobiDBLite consensus disorder prediction 241 275 - -
Cco08g1183 292 MobiDBLite consensus disorder prediction 224 277 - -
Cco08g1183 292 MobiDBLite consensus disorder prediction 84 101 - -
Cco08g1183 292 FunFam WRKY transcription factor 57 122 196 - -
Cco08g1183 292 SMART WRKY_cls 136 195 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1183 292 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 89 230 IPR044810 GO:0003700(InterPro)
Cco08g1183 292 SUPERFAMILY WRKY DNA-binding domain 128 194 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1183 292 ProSiteProfiles WRKY domain profile. 131 196 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco08g1183 292 Pfam WRKY DNA -binding domain 137 193 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0785 Cco-Chr5:6559253 Cco08g1183 Cco-Chr8:23597915 1.70E-35 dispersed
Cco08g1183 Cco-Chr8:23597915 Cco09g2450 Cco-Chr9:38670080 5.80E-37 dispersed
Cco08g1183 Cco-Chr8:23597915 Cco06g0446 Cco-Chr6:4905637 1.90E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59791 PF03106 WRKY 8.80E-25 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1183 - - - 0.0