Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1195 ATGTCTTCCGCCGAGAAGGAAAGAGAGACCCAGGTTTACATGGCCAAGCTCGCCGAGCAGGCCGAACGCTATGACGAAATGGTTGAGTGTATGAAGAATATTGCAAAACTTGACCTCGAACTAACTGTAGAGGAGAGGAACCTTCTTTCTGTGGGATACAAAAATGTCATAGGTGCCCGACGAGCTTCTTGGCGCATCATGTCTTCAATTGAGCAGAAAGAGGAGTCTAAGGGGAATGAGAACATTGTAAAATTGATAAAGAGTTACCGCCAGAAAGTGGAGGAGGAGCTTTCAAAGATTTGTGGTGACATTCTCTCTATCATAGACAAGCATCTAATCCCTCATTCGTCCTCTGCAGAAGCCACCGTTTTCTACTACAAGATGAAAGGTGACTACTATCGTTATCTTGCTGAGTTCAAGACAGATCAAGATAGAAAAGAGGCTGCTGATCAATCGTTGAAGGGATATGAGGCTGCCTCAGGCACTGCGAATACCGAACTCCCATCAACCCACCCAATCCGTCTTGGCCTTGCACTCAATTTTTCTGTCTTCTACTATGAGATTATGAATTCTCCTGAGAGAGCTTGCCATTTGGCTAAACAAGCTTTTGATGAGGCAATTGCAGAGTTGGATACCTTGAGTGAGGAATCATACAAGGACAGCACTCTGATCATGCAGCTGTTGAGAGACAACCTCACCCTCTGGACCTCAGATTTGCCTGAAGATGGCGGTGACGAAAACTTCAAAGCTGAGGAATCCAAACCTGCGGAACCTGAGGCTCAGCAAGCCAAATGA 795 45.91 MSSAEKERETQVYMAKLAEQAERYDEMVECMKNIAKLDLELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNENIVKLIKSYRQKVEEELSKICGDILSIIDKHLIPHSSSAEATVFYYKMKGDYYRYLAEFKTDQDRKEAADQSLKGYEAASGTANTELPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDENFKAEESKPAEPEAQQAK 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23681446 23684171 - CcPI632755_08g011950.1 Cco08g1195 185669

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1195 264 PIRSF 14-3-3 2 248 IPR000308 -
Cco08g1195 264 Pfam 14-3-3 protein 14 236 IPR023410 -
Cco08g1195 264 ProSitePatterns 14-3-3 proteins signature 2. 218 237 IPR023409 -
Cco08g1195 264 SUPERFAMILY 14-3-3 protein 7 238 IPR036815 -
Cco08g1195 264 Coils Coil 14 34 - -
Cco08g1195 264 SMART 1433_4 8 249 IPR023410 -
Cco08g1195 264 PANTHER 14-3-3 PROTEIN 7 241 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Cco08g1195 264 MobiDBLite consensus disorder prediction 238 264 - -
Cco08g1195 264 PRINTS 14-3-3 protein zeta signature 155 181 IPR000308 -
Cco08g1195 264 PRINTS 14-3-3 protein zeta signature 209 238 IPR000308 -
Cco08g1195 264 PRINTS 14-3-3 protein zeta signature 40 69 IPR000308 -
Cco08g1195 264 PRINTS 14-3-3 protein zeta signature 182 208 IPR000308 -
Cco08g1195 264 PRINTS 14-3-3 protein zeta signature 89 113 IPR000308 -
Cco08g1195 264 PRINTS 14-3-3 protein zeta signature 120 142 IPR000308 -
Cco08g1195 264 MobiDBLite consensus disorder prediction 242 258 - -
Cco08g1195 264 FunFam 14-3-3 protein epsilon 3 250 - -
Cco08g1195 264 Gene3D - 1 249 IPR036815 -
Cco08g1195 264 Coils Coil 196 216 - -
Cco08g1195 264 ProSitePatterns 14-3-3 proteins signature 1. 46 56 IPR023409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1195 K06630 - - csv:101221858 511.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2645 Cco-Chr5:34563465 Cco08g1195 Cco-Chr8:23681446 4.00E-130 dispersed
Cco07g0275 Cco-Chr7:2825791 Cco08g1195 Cco-Chr8:23681446 8.70E-109 dispersed
Cco08g1195 Cco-Chr8:23681446 Cco11g1462 Cco-Chr11:27431338 3.60E-102 dispersed
Cco08g1195 Cco-Chr8:23681446 Cco08g1263 Cco-Chr8:24433952 6.90E-106 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1276 . 4 242 14-3-3 family AT4G09000 90.8 6.6e-119 424.1
Cco11g1473 . 5 242 14-3-3 family AT4G09000 90.3 3.3e-118 421.8
Cco07g1702 . 22 257 14-3-3 family AT4G09000 86.9 2.1e-112 402.5
Cco11g1495 . 11 246 14-3-3 family AT4G09000 76.3 1.1e-100 363.6
Cco08g1338 . 10 246 14-3-3 family AT4G09000 74.7 3.8e-98 355.1
Cco07g0275 . 7 238 14-3-3 family AT4G09000 72.6 4.8e-93 338.2
Cco05g2645 . 4 239 14-3-3 family AT4G09000 72.3 1.5e-91 333.2
Cco08g1195 . 4 239 14-3-3 family AT4G09000 71.8 7.6e-91 330.9
Cco11g1462 . 50 281 14-3-3 family AT4G09000 73.1 1.1e-89 327.0
Cco08g1263 . 5 236 14-3-3 family AT4G09000 70.1 1.4e-89 326.6
Cco08g1276 . 6 261 14-3-3 family AT1G78300 89.8 1.5e-124 442.6
Cco11g1473 . 5 258 14-3-3 family AT1G78300 91.0 1.5e-124 442.6
Cco07g1702 . 24 269 14-3-3 family AT1G78300 87.4 1.5e-116 416.0
Cco11g1495 . 11 247 14-3-3 family AT1G78300 76.4 3.9e-101 364.8
Cco08g1338 . 11 247 14-3-3 family AT1G78300 75.5 1.6e-99 359.4
Cco07g0275 . 7 247 14-3-3 family AT1G78300 71.6 2.1e-94 342.4
Cco08g1195 . 8 257 14-3-3 family AT1G78300 70.6 5.1e-93 337.8
Cco05g2645 . 8 255 14-3-3 family AT1G78300 70.8 8.7e-93 337.0
Cco08g1263 . 1 250 14-3-3 family AT1G78300 67.9 5.6e-92 334.3
Cco11g1462 . 46 288 14-3-3 family AT1G78300 69.4 4.0e-90 328.2
Cco07g1702 . 22 275 14-3-3 family AT5G38480 90.6 1.2e-123 439.5
Cco08g1276 . 6 252 14-3-3 family AT5G38480 85.8 1.0e-114 409.8
Cco11g1473 . 6 252 14-3-3 family AT5G38480 85.4 2.3e-114 408.7
Cco11g1495 . 10 251 14-3-3 family AT5G38480 73.5 3.0e-98 355.1
Cco08g1338 . 10 251 14-3-3 family AT5G38480 74.0 3.3e-97 351.7
Cco05g2645 . 8 255 14-3-3 family AT5G38480 73.6 4.5e-94 341.3
Cco07g0275 . 7 247 14-3-3 family AT5G38480 72.4 2.2e-93 339.0
Cco08g1263 . 5 247 14-3-3 family AT5G38480 72.2 6.5e-93 337.4
Cco08g1195 . 8 255 14-3-3 family AT5G38480 72.0 8.5e-93 337.0
Cco11g1462 . 50 293 14-3-3 family AT5G38480 71.1 1.5e-89 326.2
Cco08g1276 . 3 242 14-3-3 family AT1G35160 90.0 1.4e-118 422.9
Cco11g1473 . 4 242 14-3-3 family AT1G35160 89.5 6.8e-118 420.6
Cco07g1702 . 22 256 14-3-3 family AT1G35160 86.8 9.5e-112 400.2
Cco11g1495 . 11 246 14-3-3 family AT1G35160 77.1 5.8e-101 364.4
Cco08g1338 . 1 246 14-3-3 family AT1G35160 73.2 4.6e-98 354.8
Cco07g0275 . 2 237 14-3-3 family AT1G35160 71.4 1.3e-92 336.7
Cco05g2645 . 8 239 14-3-3 family AT1G35160 73.1 2.4e-91 332.4
Cco08g1195 . 8 239 14-3-3 family AT1G35160 72.6 1.2e-90 330.1
Cco11g1462 . 45 281 14-3-3 family AT1G35160 72.0 1.0e-89 327.0
Cco08g1263 . 5 236 14-3-3 family AT1G35160 69.7 1.3e-89 326.6
Cco07g1702 . 21 270 14-3-3 family AT5G16050 86.0 1.2e-116 416.4
Cco08g1276 . 3 253 14-3-3 family AT5G16050 79.3 1.2e-108 389.8
Cco11g1473 . 4 251 14-3-3 family AT5G16050 79.5 5.4e-106 380.9
Cco08g1338 . 10 248 14-3-3 family AT5G16050 71.1 2.0e-92 335.9
Cco11g1495 . 10 248 14-3-3 family AT5G16050 69.9 1.1e-90 330.1
Cco08g1195 . 3 246 14-3-3 family AT5G16050 66.3 2.4e-85 312.4
Cco07g0275 . 1 246 14-3-3 family AT5G16050 65.5 5.3e-85 311.2
Cco05g2645 . 3 246 14-3-3 family AT5G16050 65.0 9.0e-85 310.5
Cco08g1263 . 2 247 14-3-3 family AT5G16050 64.9 2.0e-84 309.3
Cco11g1462 . 50 287 14-3-3 family AT5G16050 66.3 1.2e-81 300.1
Cco08g1338 . 9 246 14-3-3 family AT5G10450 87.0 9.4e-114 406.8
Cco11g1495 . 9 246 14-3-3 family AT5G10450 85.3 3.3e-111 398.3
Cco11g1473 . 1 242 14-3-3 family AT5G10450 79.4 1.4e-104 376.3
Cco08g1276 . 3 251 14-3-3 family AT5G10450 76.8 1.8e-104 375.9
Cco07g1702 . 24 275 14-3-3 family AT5G10450 74.3 4.4e-103 371.3
Cco07g0275 . 1 238 14-3-3 family AT5G10450 67.6 5.2e-88 321.2
Cco08g1263 . 5 236 14-3-3 family AT5G10450 67.2 2.4e-85 312.4
Cco05g2645 . 3 239 14-3-3 family AT5G10450 66.3 7.0e-85 310.8
Cco11g1462 . 50 281 14-3-3 family AT5G10450 67.7 2.7e-84 308.9
Cco08g1195 . 3 239 14-3-3 family AT5G10450 65.4 2.3e-83 305.8
Cco07g1702 . 20 277 14-3-3 family AT3G02520 91.1 8.5e-128 453.4
Cco08g1276 . 6 252 14-3-3 family AT3G02520 87.1 8.0e-118 420.2
Cco11g1473 . 5 258 14-3-3 family AT3G02520 84.8 5.2e-117 417.5
Cco08g1338 . 10 248 14-3-3 family AT3G02520 75.7 7.5e-100 360.5
Cco11g1495 . 10 248 14-3-3 family AT3G02520 75.3 7.5e-100 360.5
Cco08g1195 . 8 257 14-3-3 family AT3G02520 69.4 3.0e-93 338.6
Cco05g2645 . 8 256 14-3-3 family AT3G02520 68.9 4.0e-93 338.2
Cco08g1263 . 1 249 14-3-3 family AT3G02520 69.4 1.5e-92 336.3
Cco07g0275 . 4 238 14-3-3 family AT3G02520 71.7 1.7e-91 332.8
Cco11g1462 . 46 286 14-3-3 family AT3G02520 71.6 8.3e-91 330.5
Cco08g1338 . 9 246 14-3-3 family AT5G65430 88.7 1.2e-115 412.9
Cco11g1495 . 9 246 14-3-3 family AT5G65430 84.0 3.2e-111 398.3
Cco11g1473 . 1 242 14-3-3 family AT5G65430 80.2 4.5e-105 377.9
Cco08g1276 . 8 242 14-3-3 family AT5G65430 80.5 8.4e-104 373.6
Cco07g1702 . 24 257 14-3-3 family AT5G65430 79.1 3.2e-103 371.7
Cco07g0275 . 1 238 14-3-3 family AT5G65430 69.3 2.0e-89 325.9
Cco05g2645 . 8 239 14-3-3 family AT5G65430 69.8 4.2e-87 318.2
Cco08g1263 . 5 236 14-3-3 family AT5G65430 69.4 1.6e-86 316.2
Cco11g1462 . 45 281 14-3-3 family AT5G65430 68.3 1.0e-85 313.5
Cco08g1195 . 8 239 14-3-3 family AT5G65430 68.5 8.7e-85 310.5
Cco07g0275 . 1 261 14-3-3 family AT2G42590 81.4 6.4e-118 420.6
Cco08g1263 . 3 242 14-3-3 family AT2G42590 77.9 4.0e-104 374.8
Cco05g2645 . 6 257 14-3-3 family AT2G42590 75.5 6.8e-104 374.0
Cco08g1195 . 6 253 14-3-3 family AT2G42590 75.4 9.8e-103 370.2
Cco11g1462 . 48 290 14-3-3 family AT2G42590 74.9 2.4e-101 365.5
Cco07g1702 . 24 264 14-3-3 family AT2G42590 73.0 1.3e-91 333.2
Cco08g1276 . 8 248 14-3-3 family AT2G42590 70.5 3.9e-91 331.6
Cco11g1473 . 8 245 14-3-3 family AT2G42590 71.4 1.9e-90 329.3
Cco11g1495 . 11 248 14-3-3 family AT2G42590 65.1 1.1e-82 303.5
Cco08g1338 . 11 248 14-3-3 family AT2G42590 64.7 1.6e-81 299.7
Cco08g1263 . 1 241 14-3-3 family AT1G22300 80.1 2.8e-104 375.2
Cco07g0275 . 6 242 14-3-3 family AT1G22300 78.5 1.8e-103 372.5
Cco05g2645 . 5 244 14-3-3 family AT1G22300 77.5 3.4e-102 368.2
Cco08g1195 . 5 244 14-3-3 family AT1G22300 76.7 1.7e-101 365.9
Cco11g1462 . 46 286 14-3-3 family AT1G22300 76.3 6.0e-99 357.5
Cco07g1702 . 24 262 14-3-3 family AT1G22300 71.5 6.0e-91 330.9
Cco08g1276 . 8 246 14-3-3 family AT1G22300 70.3 9.6e-89 323.6
Cco11g1473 . 8 245 14-3-3 family AT1G22300 69.3 2.4e-87 318.9
Cco11g1495 . 11 248 14-3-3 family AT1G22300 65.5 4.3e-81 298.1
Cco08g1338 . 11 248 14-3-3 family AT1G22300 64.7 3.1e-79 292.0
Cco07g0275 . 6 246 14-3-3 family AT1G34760 80.5 2.5e-105 378.6
Cco05g2645 . 5 247 14-3-3 family AT1G34760 80.2 9.6e-105 376.7
Cco08g1263 . 1 245 14-3-3 family AT1G34760 80.0 1.6e-104 375.9
Cco08g1195 . 5 247 14-3-3 family AT1G34760 79.4 6.2e-104 374.0
Cco11g1462 . 46 289 14-3-3 family AT1G34760 77.5 7.9e-99 357.1
Cco07g1702 . 24 266 14-3-3 family AT1G34760 72.0 1.9e-89 325.9
Cco08g1276 . 8 245 14-3-3 family AT1G34760 72.3 5.7e-89 324.3
Cco11g1473 . 8 249 14-3-3 family AT1G34760 69.4 4.8e-88 321.2
Cco11g1495 . 11 247 14-3-3 family AT1G34760 63.7 1.8e-79 292.7
Cco08g1338 . 11 247 14-3-3 family AT1G34760 64.1 5.9e-78 287.7
Cco05g2645 . 2 254 14-3-3 family AT1G26480 86.6 1.6e-118 422.5
Cco08g1195 . 2 254 14-3-3 family AT1G26480 85.8 8.1e-118 420.2
Cco07g0275 . 3 242 14-3-3 family AT1G26480 80.8 4.4e-108 387.9
Cco08g1263 . 2 249 14-3-3 family AT1G26480 77.4 2.7e-105 378.6
Cco11g1462 . 48 287 14-3-3 family AT1G26480 77.9 4.0e-101 364.8
Cco08g1276 . 8 260 14-3-3 family AT1G26480 72.0 5.3e-93 337.8
Cco11g1473 . 8 247 14-3-3 family AT1G26480 73.8 1.3e-91 333.2
Cco07g1702 . 21 272 14-3-3 family AT1G26480 72.0 4.9e-91 331.3
Cco11g1495 . 11 244 14-3-3 family AT1G26480 67.1 3.2e-82 302.0
Cco08g1338 . 11 244 14-3-3 family AT1G26480 66.2 2.3e-80 295.8
Cco05g2645 . 5 237 14-3-3 family AT1G78220 52.6 9.5e-65 243.8
Cco07g0275 . 6 236 14-3-3 family AT1G78220 51.3 1.0e-63 240.4
Cco08g1263 . 1 234 14-3-3 family AT1G78220 50.6 8.8e-63 237.3
Cco08g1195 . 5 237 14-3-3 family AT1G78220 50.9 2.0e-62 236.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000281 3 7 3 4 1 5 6 5 5 3 5 5 6 5 5 5 5 6 6 5 5 5 5 4 4 5 4 9 8 4 148