Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1198 ATGATAACCGAAAACATTGGAAAGAATCCCATCAGGTCTCATCTGCTCAGTATCAGTCCACCTCTCACCTTCCTGCTAAATCTGGAATTTCTTGTAGATTTTCACTTTCCCATTGATCCTTTTTTGATTTCTGCATCTGGGTCTTTTGGTTATGGCGTTCCAAGTGTTTTCATCCACACAATTGCTTTGAAAATAGATTGGATGCTCCATGGAAAAGCTGACAAAATCATGACGGGACTACGATCCATGGATGTCTCAAGAGGGGTAAAGAAGAGAGGCCATGGAAATCGTTCTTGGATAAAGATTGATCAGGAAGGGAACTCAGAGGTTTTGGAACTTGAGAAGGCTACGATAATGAGGCGTTGTTCTTTACCTTCTAGAGATATGCGACTTTTGGATCCTCTCTTCCTTTGTCCATCCACAATTCTTGGAAGGGAGAAGGCAATTGTTGTCAGTCTTGAGCAAATTCGGTGTATAATCACATCTGATGAGGTTATTTTAATGAATTCCTTAGATGGATGTGCTGCACAGTACAGGTCAGAACTATGCAAGCGTCTCAAGGCAAATAAAGATCAATCAGATGATTTGCCCTTTGAATTTAGGGCACTGGAGCTGGCGCTGGAACTTACTTGCTCACTTCTTGACACTCAGGTGAAGGGGATGGAAATGGAGATATACCCTCTACTGGATGATTTAGCATCTTCAATAAACACCCTTAATCTCGAAAGAGTTCGCAGATTTAAAGGCAACCTTCTGACCTTGACTCAACAAGTGCAAAAGGTGCGTGATGAAATTGAACATCTGATGGATGATGATGGGGATATGGCTGAGATGTATCTGACACAGAAAAAACAAAAATTGGAGGCGAACATCCGAAGTAACTTGTATTTGGAAGCTAACTTCTTTGGGAAACAGCCACCAAAATCAGCTCCTGTTTCGCCAGTGGGTTCTGCCAATGGAACTTATAAATTACAAAGGGCTTTTAGCAGTATTGTGAACTCAAGCAGCATGATGAGTTCATCGACCAGTGGAGATAACATCGAACAATTGGAGATGCTGCTCGAAGCATACTTTGTGGTCATTGACGACATGCTCAGTAAATTGTTATCGCTCAAAGAGTCTATAGATGACACAGAAGATCTGATCAACATTAAACTGGGCAACGTTCAGAACCAGCTGATACAATTTCAGTTGCTTTTTACTGCTGCTACATTCTTGGCTACAATGTTTGCGGCTTTAACAGCGGTTTTTGGCATGAATTTTGCCGATGATGTCTTCGAGCATCCGACTTCTTTCCAGTTGATAGTTTACTTGACCTTGATTGCCTGTGGCCTTGTGTATTTCGGTTTTCTATTCTATTTTAGGTACAAGAAAATATTCCCACTGTAA 1389 41.32 MITENIGKNPIRSHLLSISPPLTFLLNLEFLVDFHFPIDPFLISASGSFGYGVPSVFIHTIALKIDWMLHGKADKIMTGLRSMDVSRGVKKRGHGNRSWIKIDQEGNSEVLELEKATIMRRCSLPSRDMRLLDPLFLCPSTILGREKAIVVSLEQIRCIITSDEVILMNSLDGCAAQYRSELCKRLKANKDQSDDLPFEFRALELALELTCSLLDTQVKGMEMEIYPLLDDLASSINTLNLERVRRFKGNLLTLTQQVQKVRDEIEHLMDDDGDMAEMYLTQKKQKLEANIRSNLYLEANFFGKQPPKSAPVSPVGSANGTYKLQRAFSSIVNSSSMMSSSTSGDNIEQLEMLLEAYFVVIDDMLSKLLSLKESIDDTEDLINIKLGNVQNQLIQFQLLFTAATFLATMFAALTAVFGMNFADDVFEHPTSFQLIVYLTLIACGLVYFGFLFYFRYKKIFPL 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23709281 23714553 - CcPI632755_08g011980.1 Cco08g1198 185672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1198 462 Coils Coil 251 271 - -
Cco08g1198 462 CDD Mrs2_Mfm1p-like 99 459 IPR039204 -
Cco08g1198 462 Gene3D - 85 170 - -
Cco08g1198 462 Pfam Magnesium transporter MRS2-like 102 288 - -
Cco08g1198 462 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 86 459 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Cco08g1198 462 Gene3D Magnesium transport protein CorA, transmembrane region 173 393 - -
Cco08g1198 462 FunFam Magnesium transporter MRS2-1 87 170 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1198 Cco-Chr8:23709281 Cco10g1274 Cco-Chr10:25569569 5.50E-106 dispersed
Cco08g1198 Cco-Chr8:23709281 Cco07g0064 Cco-Chr7:611745 5.00E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1198 K16075 - csv:101220835 656.751