Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1201 ATGCCGAGCATTTCGGCCCTCTATTCCATTCAAGAAGTCTCACAGCACAGTTCCAACGACGACTGTTGGATCATTATCGATGGCAAGGTATATGATTTGACTTCATATTTGGATGAGCATCCCGGTGGAGATGATGTTATTGTGGCTGCAACTGGCAGAGATGCCACAGATGATTTTGAAGATGCTGGTCATAGCAAAGACGCCAGAGAGTTGATGGAGAAGTTCTATATCGGCGTGCTTGATACATCTCCCTCGGATAGCCTAGAACTTGAAACGAAACAAGTAGACGGTTATGCAGCTCGGTTTCAGGCCTTGACAAAGCAATACTGGAAGGCTCCTGTTGCAGTACTTGGTATTTCTGTGGTAGTTGGCTGTCTATACTTGCGCAAGAAGTGA 396 45.96 MPSISALYSIQEVSQHSSNDDCWIIIDGKVYDLTSYLDEHPGGDDVIVAATGRDATDDFEDAGHSKDARELMEKFYIGVLDTSPSDSLELETKQVDGYAARFQALTKQYWKAPVAVLGISVVVGCLYLRKK 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23729642 23731467 + CcPI632755_08g012010.1 Cco08g1201 185675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1201 131 SMART Cyt_b5_2 8 81 IPR001199 -
Cco08g1201 131 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Cco08g1201 131 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Cco08g1201 131 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Cco08g1201 131 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Cco08g1201 131 FunFam Cytochrome b5 type B 3 85 - -
Cco08g1201 131 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Cco08g1201 131 PANTHER CYTOCHROME B5 6 129 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Cco08g1201 131 Gene3D - 5 93 IPR036400 -
Cco08g1201 131 Pfam Cytochrome b5-like Heme/Steroid binding domain 11 81 IPR001199 -
Cco08g1201 131 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Cco08g1201 131 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 5 84 IPR036400 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0811 Cco-Chr6:9552183 Cco08g1201 Cco-Chr8:23729642 2.30E-25 dispersed
Cco07g0190 Cco-Chr7:2006895 Cco08g1201 Cco-Chr8:23729642 3.70E-23 dispersed
Cco08g1201 Cco-Chr8:23729642 Cco11g0236 Cco-Chr11:2268786 6.20E-15 dispersed
Cco08g1201 Cco-Chr8:23729642 Cco05g0387 Cco-Chr5:3164184 4.20E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1201 K23490 - csv:101220127 243.047