Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco08g1203 | ATGTCATCACAAACCTTCAACTCTCTTCTTCTTCATTTCCCCATTTCCATTTCCCAAAGCTTCGAAGCTTTTCTTCTTACCCTTTTTCTCCTCTCCATTTTCGCCTTCTTCCTCCATCCCGGTGGCTTAGCTTGGGCCGTTTCCAAGTTCAAAACCACCGCCTCCACCGCCATCCCTGGCCCTTCCGGCCTCCCATTCATCGGGCTTCTCCATGTCTTCACTCTTTCAACTCCTCACAAAGCCCTCTCTGCCCTTGCTAATCGATTCAAAGCATACCCATTAATGGCTTTCTCTGTTGGGTTAACTAGATTTGTGATTTCTAGTAATCCCGATGTTGCTAAAGAGATTCTTAACAGCCCTGCCTTTGCTGATAGACCCGTGAAAGAGTCTGCTTATGAACTGCTTTTCAACAGAGCAATGGGGTTTGCTCCTTATGGTGAGTATTGGAGGAATTTGAGAAGGATTTCAGCTACTTATATGTTTAGTCCTAAGAGAATAGCTGGGTTTGAAGGGTTTAGGAAAGAAGTTGGGGTTAAAATGGTTAGGGAAATTGAGAAATCTATGGTTTTAAAAGGGGATGTGAGGGTTAAAGAGATTCTTCATTTTGGGTCTTTGAATAATGTTATGATGACTGTTTTTGGGAAATGTTATGACTTTTGTAATGGGGATAGAGATGGGGTTGAGCTTGAAGAGTTGGTTAAAGAAGGGTATGATTTGCTTGGGATTTTCAATTGGAGTGACCATTTTCCTTTATTGGGTTTCTTGGATTTACAAGGTGTGAGGAAAAGATGTAGGTGTTTGGCTTCTAAAGTGAATGTATTTGTGGGAAAAATCATCGAGGAACATAGAATGAAAAGAGAAATCAAGGGATATCATCAACAAGAACATAACAAAGACTTTGTTGATGTTCTGCTTGATTTGGAGAAAGATGATAAACTCTCAGATTCTGACATGATTGCTGTTCTTTGGGAAATGATATTTAGAGGAACTGACACAGTAGCCATACTTCTGGAATGGATTTTAGCAAGAATGGTGATACACCAAGATATCCAAACCAAAGCCCAAAATGAAATTGATTCAGTAATAGGCAAGAAATGGAGAGCCATTTCAGATACTGATATCCAAAACCTTCCATATCTTCAAGCCATTGTGAAGGAATGTTTAAGAATGCACCCACCAGGACCACTTCTGTCATGGGCAAGGCTAGCTGTGGCGGATGTGCACGTCGATGGGAGAGTGATACCGGCGGGGACGACGGCGATGGTGAACATGTGGGCAATAACTCATAATGGAAAAGTATGGAGAGATGCAGAGAAGTTTGATCCAAATAGATTCATAGAAGAGGAAATTAGTGTAATGGGAAGTGATTTGAGATTGGCTCCATTTGGGGCAGGGAGAAGAGTTTGCCCTGGAAAAGCAATGGGATTGGCTACTGTCCATCTCTGGTTGGCTCAGTTGCTTCAAGCTTACAAATGGATGCCTTGTTCTGAAGAAGCCATTAATGGTGTTGACCTGTCAGAATGCCTTAAACTCTCTCTGGAAATGAAAACTCCATTGGTTTGCAGAGCTGTTCCCAGGGCTGGTTGGGGAGAGGACTGA | 1599 | 42.34 | MSSQTFNSLLLHFPISISQSFEAFLLTLFLLSIFAFFLHPGGLAWAVSKFKTTASTAIPGPSGLPFIGLLHVFTLSTPHKALSALANRFKAYPLMAFSVGLTRFVISSNPDVAKEILNSPAFADRPVKESAYELLFNRAMGFAPYGEYWRNLRRISATYMFSPKRIAGFEGFRKEVGVKMVREIEKSMVLKGDVRVKEILHFGSLNNVMMTVFGKCYDFCNGDRDGVELEELVKEGYDLLGIFNWSDHFPLLGFLDLQGVRKRCRCLASKVNVFVGKIIEEHRMKREIKGYHQQEHNKDFVDVLLDLEKDDKLSDSDMIAVLWEMIFRGTDTVAILLEWILARMVIHQDIQTKAQNEIDSVIGKKWRAISDTDIQNLPYLQAIVKECLRMHPPGPLLSWARLAVADVHVDGRVIPAGTTAMVNMWAITHNGKVWRDAEKFDPNRFIEEEISVMGSDLRLAPFGAGRRVCPGKAMGLATVHLWLAQLLQAYKWMPCSEEAINGVDLSECLKLSLEMKTPLVCRAVPRAGWGED | 532 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 23742250 | 23744252 | - | CcPI632755_08g012030.1 | Cco08g1203 | 185677 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco08g1203 | 532 | Gene3D | Cytochrome P450 | 46 | 522 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1203 | 532 | FunFam | Cytochrome P450 78A5 | 50 | 526 | - | - | |
| Cco08g1203 | 532 | CDD | CYP78 | 90 | 519 | - | - | |
| Cco08g1203 | 532 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 462 | 471 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco08g1203 | 532 | PANTHER | CYTOCHROME P450 78A7-RELATED | 22 | 523 | IPR051996 | - | |
| Cco08g1203 | 532 | PRINTS | E-class P450 group I signature | 337 | 363 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1203 | 532 | PRINTS | E-class P450 group I signature | 423 | 447 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1203 | 532 | PRINTS | E-class P450 group I signature | 317 | 334 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1203 | 532 | PRINTS | E-class P450 group I signature | 469 | 492 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1203 | 532 | PRINTS | E-class P450 group I signature | 203 | 221 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1203 | 532 | PRINTS | E-class P450 group I signature | 381 | 399 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1203 | 532 | PRINTS | E-class P450 group I signature | 459 | 469 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1203 | 532 | SUPERFAMILY | Cytochrome P450 | 58 | 526 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1203 | 532 | Pfam | Cytochrome P450 | 59 | 507 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1203 | 532 | PRINTS | P450 superfamily signature | 328 | 345 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1203 | 532 | PRINTS | P450 superfamily signature | 382 | 393 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1203 | 532 | PRINTS | P450 superfamily signature | 469 | 480 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco08g1203 | 532 | PRINTS | P450 superfamily signature | 460 | 469 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco02g0090 | Cco-Chr2:1000676 | Cco08g1203 | Cco-Chr8:23742250 | 1.70E-135 | dispersed | |
| Cco08g1203 | Cco-Chr8:23742250 | Cco03g0330 | Cco-Chr3:3651112 | 2.30E-71 | dispersed | |
| Cco06g0284 | Cco-Chr6:3170598 | Cco08g1203 | Cco-Chr8:23742250 | 8.40E-135 | transposed | |
| Cco11g1418 | Cco-Chr11:26930854 | Cco08g1203 | Cco-Chr8:23742250 | 3.90E-158 | transposed | |
| Cco01g1754 | Cco-Chr1:30317539 | Cco08g1203 | Cco-Chr8:23742250 | 5.20E-193 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco08g1203 | K20619 | - | csv:101221468 | 973.0 |