Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1206 | ATGGGAAGAGGGAGAGTAGAGCTGAAGAAGATAGAGAACAAAATAAATAGACAAGTTACCTTCACAAAAAGAAGAAATGGACTTCTTAAAAAGGCTTATGAGCTCTCCATTTTATGTGATGCTGAGGTTGCATTGATCATCTTCTCCACTCGTGGCAAACTCTATGAATTCTCAAGCTCTTCCAGTATAGCCAAGACCCTGGAGAGGTATGAAAGGCATAGCTACGGTGCATTGGAAGCCTCCCACCCTCCAAAGGACACTGAGAGATGGTACCAAGAGTATTTGAAGCTGAAAGCAGAAGTGGAAGCTTTACAGCATTCACAGAGACGATTTCTTGGAGAAGAATTGAATGATTTGGAGACTAAGGAACTCGACCAACTAGAAATTCAATTGGAAATGTCTCTAAAGCAAATCAGATCTACTAAGAGCCAAACTATGTTTGATCAGTTGTCTGATCTCCAGAAAAAGGAAGATATGCTGCTGGAAACAAATCAAGCTTTGAGGAAGAAGTTGGAGGAAAGTAGTTCTTCTCTTCATACACCATGGGATTCTTCACCCAACAATTTGCAATACTGCAGACAACCTGAAGACTTTCTTCAACGCAATAATAATATTATTGCATTGGAAAATAGTTACAATCCAGCAGAAGTTTCAAACCAAGAAAATGGTGTAAACTCTGGGCCAAATGGTAATGGGTTGTCTTCACAATGGATGTTGCTTTGA | 723 | 39.83 | MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSSSSIAKTLERYERHSYGALEASHPPKDTERWYQEYLKLKAEVEALQHSQRRFLGEELNDLETKELDQLEIQLEMSLKQIRSTKSQTMFDQLSDLQKKEDMLLETNQALRKKLEESSSSLHTPWDSSPNNLQYCRQPEDFLQRNNNIIALENSYNPAEVSNQENGVNSGPNGNGLSSQWMLL | 240 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 23785466 | 23791339 | + | CcPI632755_08g012060.1 | Cco08g1206 | 185680 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1206 | 240 | Gene3D | - | 13 | 83 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g1206 | 240 | Pfam | K-box region | 86 | 172 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco08g1206 | 240 | Coils | Coil | 117 | 144 | - | - | |
Cco08g1206 | 240 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g1206 | 240 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g1206 | 240 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g1206 | 240 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g1206 | 240 | FunFam | MADS-box transcription factor 1 | 13 | 88 | - | - | |
Cco08g1206 | 240 | SUPERFAMILY | SRF-like | 2 | 83 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g1206 | 240 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 189 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cco08g1206 | 240 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g1206 | 240 | CDD | MADS_MEF2_like | 2 | 78 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Cco08g1206 | 240 | Coils | Coil | 150 | 173 | - | - | |
Cco08g1206 | 240 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Cco08g1206 | 240 | ProSiteProfiles | K-box domain profile. | 87 | 177 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Cco08g1206 | 240 | MobiDBLite | consensus disorder prediction | 216 | 240 | - | - | |
Cco08g1206 | 240 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco07g1680 | Cco-Chr7:30789828 | Cco08g1206 | Cco-Chr8:23785466 | 9.50E-65 | dispersed | |
Cco08g0096 | Cco-Chr8:1584628 | Cco08g1206 | Cco-Chr8:23785466 | 1.50E-37 | dispersed | |
Cco08g0104 | Cco-Chr8:1680178 | Cco08g1206 | Cco-Chr8:23785466 | 1.00E-32 | dispersed | |
Cco08g1206 | Cco-Chr8:23785466 | Cco10g0961 | Cco-Chr10:20860110 | 3.50E-32 | dispersed | |
Cco08g1206 | Cco-Chr8:23785466 | Cco08g1207 | Cco-Chr8:23798980 | 9.60E-46 | tandem | |
Cco01g1749 | Cco-Chr1:30238044 | Cco08g1206 | Cco-Chr8:23785466 | 1.50E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59792 | PF01486 | K-box | 2.50E-27 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1206 | K09264 | - | csv:101220998 | 416.772 |