Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1206 ATGGGAAGAGGGAGAGTAGAGCTGAAGAAGATAGAGAACAAAATAAATAGACAAGTTACCTTCACAAAAAGAAGAAATGGACTTCTTAAAAAGGCTTATGAGCTCTCCATTTTATGTGATGCTGAGGTTGCATTGATCATCTTCTCCACTCGTGGCAAACTCTATGAATTCTCAAGCTCTTCCAGTATAGCCAAGACCCTGGAGAGGTATGAAAGGCATAGCTACGGTGCATTGGAAGCCTCCCACCCTCCAAAGGACACTGAGAGATGGTACCAAGAGTATTTGAAGCTGAAAGCAGAAGTGGAAGCTTTACAGCATTCACAGAGACGATTTCTTGGAGAAGAATTGAATGATTTGGAGACTAAGGAACTCGACCAACTAGAAATTCAATTGGAAATGTCTCTAAAGCAAATCAGATCTACTAAGAGCCAAACTATGTTTGATCAGTTGTCTGATCTCCAGAAAAAGGAAGATATGCTGCTGGAAACAAATCAAGCTTTGAGGAAGAAGTTGGAGGAAAGTAGTTCTTCTCTTCATACACCATGGGATTCTTCACCCAACAATTTGCAATACTGCAGACAACCTGAAGACTTTCTTCAACGCAATAATAATATTATTGCATTGGAAAATAGTTACAATCCAGCAGAAGTTTCAAACCAAGAAAATGGTGTAAACTCTGGGCCAAATGGTAATGGGTTGTCTTCACAATGGATGTTGCTTTGA 723 39.83 MGRGRVELKKIENKINRQVTFTKRRNGLLKKAYELSILCDAEVALIIFSTRGKLYEFSSSSSIAKTLERYERHSYGALEASHPPKDTERWYQEYLKLKAEVEALQHSQRRFLGEELNDLETKELDQLEIQLEMSLKQIRSTKSQTMFDQLSDLQKKEDMLLETNQALRKKLEESSSSLHTPWDSSPNNLQYCRQPEDFLQRNNNIIALENSYNPAEVSNQENGVNSGPNGNGLSSQWMLL 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23785466 23791339 + CcPI632755_08g012060.1 Cco08g1206 185680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1206 240 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1206 240 Pfam K-box region 86 172 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco08g1206 240 Coils Coil 117 144 - -
Cco08g1206 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1206 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1206 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1206 240 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1206 240 FunFam MADS-box transcription factor 1 13 88 - -
Cco08g1206 240 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1206 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 189 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco08g1206 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1206 240 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco08g1206 240 Coils Coil 150 173 - -
Cco08g1206 240 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1206 240 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco08g1206 240 MobiDBLite consensus disorder prediction 216 240 - -
Cco08g1206 240 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1680 Cco-Chr7:30789828 Cco08g1206 Cco-Chr8:23785466 9.50E-65 dispersed
Cco08g0096 Cco-Chr8:1584628 Cco08g1206 Cco-Chr8:23785466 1.50E-37 dispersed
Cco08g0104 Cco-Chr8:1680178 Cco08g1206 Cco-Chr8:23785466 1.00E-32 dispersed
Cco08g1206 Cco-Chr8:23785466 Cco10g0961 Cco-Chr10:20860110 3.50E-32 dispersed
Cco08g1206 Cco-Chr8:23785466 Cco08g1207 Cco-Chr8:23798980 9.60E-46 tandem
Cco01g1749 Cco-Chr1:30238044 Cco08g1206 Cco-Chr8:23785466 1.50E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59792 PF01486 K-box 2.50E-27 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1206 K09264 - csv:101220998 416.772