Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1207 ATGGGAAGAGGTAGGGTTCAGTTGAAAAGAATTGAAAACAAAATAAACAGGCAAGTTACTTTCTCCAAAAGGAAAGCTGGATTGCTGAAGAAGGCTCATGAAATCTCTGTTCTTTGTGATGCTGAAGTAGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATACTCCTCTGATTCCAGCATGGAGAAAATACTCGAACGATATGAGAGATATTCTTACGTGGGAAGACAGCAACTTGCAGCTTCTGAATCTGAATTTTCTCATGAAAATTGGACTCTCGAATACTACCGACTCAAGTCCAAAGTCGAACTTTTACAAAGAAACAACAGTCATTATATGGGAGAAGATTTGGATTCATTGAGTGTTAAAGAACTGCAAAACTTGGAGCAACAAATTGACACTGCACTTAAACATGTTCGATCAAGAAAAAACCAACTTATGTATGATTCCATCTCTGCACTCCAAAGAAAGGAAAGAGCAATTCAGGAGCAAAATGCCCTATTGGCTAAGCAGATAAAGGAGAAGGAGAAGAGTGTAGCAATGGCACAACAGGCAGAATGGGAGCAGCAGCAACACCATGGTTACAATGCCTTATCTTTTTTATTCCCACCACCTCCTCATCCCTCTCTAAACATTGGGCTTGCAAGTTTTGAAGGTCACCAATGA 672 39.88 MGRGRVQLKRIENKINRQVTFSKRKAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYSSDSSMEKILERYERYSYVGRQQLAASESEFSHENWTLEYYRLKSKVELLQRNNSHYMGEDLDSLSVKELQNLEQQIDTALKHVRSRKNQLMYDSISALQRKERAIQEQNALLAKQIKEKEKSVAMAQQAEWEQQQHHGYNALSFLFPPPPHPSLNIGLASFEGHQ 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23798980 23804750 + CcPI632755_08g012070.1 Cco08g1207 185681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1207 223 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Cco08g1207 223 Coils Coil 127 147 - -
Cco08g1207 223 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Cco08g1207 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1207 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1207 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1207 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1207 223 Gene3D - 13 86 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1207 223 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco08g1207 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1207 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 195 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco08g1207 223 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1207 223 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Cco08g1207 223 Pfam K-box region 86 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco08g1207 223 Coils Coil 153 176 - -
Cco08g1207 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1749 Cco-Chr1:30238044 Cco08g1207 Cco-Chr8:23798980 3.70E-69 dispersed
Cco07g1681 Cco-Chr7:30811866 Cco08g1207 Cco-Chr8:23798980 9.30E-60 dispersed
Cco08g1207 Cco-Chr8:23798980 Cco10g0961 Cco-Chr10:20860110 3.30E-32 dispersed
Cco08g1206 Cco-Chr8:23785466 Cco08g1207 Cco-Chr8:23798980 9.60E-46 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59793 PF01486 K-box 2.60E-29 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1207 K09264 - csv:101219414 391.734