Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1216 | ATGAGAACGGGGAAAAGCAATCAGGACGACGAAGAGTACGAGGAGGACGAGCTGGTTGCTAAAAGAGAGGGGCCTTCTTCTACTTCCAACGCTATTAGTAGCATCGGAAACAGCAAAGATGCGAAGAACAACGATAAGGCTAATGCCATACGGTCGAAGCACTCTGTCACGGAGCAGCGCAGAAGAAGCAAGATAAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCATAGCGATCAAAAGAGAGATACTGCTTCATTTTTATTGGAGGTGATTGAATATGTTCAGTATTTACAGGAGAAGGTGCAGAAGTACGAGGGTTCATATCAGAATTGGAGTGGGGAACCTACTAAGTTAATACCATGGAGAAATAGTCATTGGCGCATGCAGACTTTTGTTGGCCATCCACATTCTGTAAAAAATGGTTCCGCTTCAGGACCAACGTATTCTGGGAAGTTTGATGACAATAGCATTTCAATTTCACCAGCCATGCTTGCAAGCTCACAAAATCCTCTCGACTCCCACTCAGGCAGAGATATTCTACAGGATGCTGACATAACAAATAAAGTTCCACTTCCCATGTCTCTGGAAGGAAATTTACATGCTTCTATCCATAGTGATGGCGTTCTTGATCAATCTCTCCACATTCCAATTTCTGATGCACAGACGACTGAGTGTCCCATCACCAACAATGCATCAAATCAACCGGAAGAGATGGCTATTGAAGGGGGGACAATAAGCGTTTCAAGCGTTTATTCAGAAGGGTTTATGAACAGCTTGGCTCAAGCTTTGCAGAGTACTGGATTGGATTTGTCGCAAGCTAGTATCTCCGTTCAGATTGATCTGGGCAAGAGAGCAAATAAGGGGATGCCATTGCCTATTTTTAAGGAAACTGGGAATCCTCCCTCCAGCCACCCAGCAATGGCAAATGTAGGGGACCTGGGCAGCGGAGATGACTCAGAACAAGCGAAAAAGCGGCTAAGAATATGA | 993 | 44.51 | MRTGKSNQDDEEYEEDELVAKREGPSSTSNAISSIGNSKDAKNNDKANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFVGHPHSVKNGSASGPTYSGKFDDNSISISPAMLASSQNPLDSHSGRDILQDADITNKVPLPMSLEGNLHASIHSDGVLDQSLHIPISDAQTTECPITNNASNQPEEMAIEGGTISVSSVYSEGFMNSLAQALQSTGLDLSQASISVQIDLGKRANKGMPLPIFKETGNPPSSHPAMANVGDLGSGDDSEQAKKRLRI | 330 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 23866431 | 23871558 | - | CcPI632755_08g012160.1 | Cco08g1216 | 185690 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1216 | 330 | MobiDBLite | consensus disorder prediction | 295 | 330 | - | - | |
Cco08g1216 | 330 | MobiDBLite | consensus disorder prediction | 44 | 62 | - | - | |
Cco08g1216 | 330 | Gene3D | - | 47 | 119 | IPR036638 | GO:0046983(InterPro) | |
Cco08g1216 | 330 | PANTHER | BES1-INTERACTING MYC-LIKE PROTEIN | 5 | 329 | IPR044295 | GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro) | |
Cco08g1216 | 330 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 47 | 119 | IPR036638 | GO:0046983(InterPro) | |
Cco08g1216 | 330 | SMART | finulus | 55 | 105 | IPR011598 | GO:0046983(InterPro) | |
Cco08g1216 | 330 | FunFam | BHLH domain class transcription factor | 47 | 119 | - | - | |
Cco08g1216 | 330 | MobiDBLite | consensus disorder prediction | 23 | 43 | - | - | |
Cco08g1216 | 330 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 49 | 99 | IPR011598 | GO:0046983(InterPro) | |
Cco08g1216 | 330 | CDD | bHLH_AtBIM_like | 48 | 124 | - | - | |
Cco08g1216 | 330 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
Cco08g1216 | 330 | Pfam | Helix-loop-helix DNA-binding domain | 51 | 100 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g1732 | Cco-Chr6:27810343 | Cco08g1216 | Cco-Chr8:23866431 | 7.80E-59 | dispersed | |
Cco07g1687 | Cco-Chr7:30858582 | Cco08g1216 | Cco-Chr8:23866431 | 1.10E-48 | dispersed | |
Cco01g1743 | Cco-Chr1:30198505 | Cco08g1216 | Cco-Chr8:23866431 | 4.00E-50 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59794 | PF00010 | HLH | 1.80E-13 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1216 | - | - | - | 0.0 |