Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1216 ATGAGAACGGGGAAAAGCAATCAGGACGACGAAGAGTACGAGGAGGACGAGCTGGTTGCTAAAAGAGAGGGGCCTTCTTCTACTTCCAACGCTATTAGTAGCATCGGAAACAGCAAAGATGCGAAGAACAACGATAAGGCTAATGCCATACGGTCGAAGCACTCTGTCACGGAGCAGCGCAGAAGAAGCAAGATAAATGAGAGATTCCAGATTTTGAGAGATCTTATACCTCATAGCGATCAAAAGAGAGATACTGCTTCATTTTTATTGGAGGTGATTGAATATGTTCAGTATTTACAGGAGAAGGTGCAGAAGTACGAGGGTTCATATCAGAATTGGAGTGGGGAACCTACTAAGTTAATACCATGGAGAAATAGTCATTGGCGCATGCAGACTTTTGTTGGCCATCCACATTCTGTAAAAAATGGTTCCGCTTCAGGACCAACGTATTCTGGGAAGTTTGATGACAATAGCATTTCAATTTCACCAGCCATGCTTGCAAGCTCACAAAATCCTCTCGACTCCCACTCAGGCAGAGATATTCTACAGGATGCTGACATAACAAATAAAGTTCCACTTCCCATGTCTCTGGAAGGAAATTTACATGCTTCTATCCATAGTGATGGCGTTCTTGATCAATCTCTCCACATTCCAATTTCTGATGCACAGACGACTGAGTGTCCCATCACCAACAATGCATCAAATCAACCGGAAGAGATGGCTATTGAAGGGGGGACAATAAGCGTTTCAAGCGTTTATTCAGAAGGGTTTATGAACAGCTTGGCTCAAGCTTTGCAGAGTACTGGATTGGATTTGTCGCAAGCTAGTATCTCCGTTCAGATTGATCTGGGCAAGAGAGCAAATAAGGGGATGCCATTGCCTATTTTTAAGGAAACTGGGAATCCTCCCTCCAGCCACCCAGCAATGGCAAATGTAGGGGACCTGGGCAGCGGAGATGACTCAGAACAAGCGAAAAAGCGGCTAAGAATATGA 993 44.51 MRTGKSNQDDEEYEEDELVAKREGPSSTSNAISSIGNSKDAKNNDKANAIRSKHSVTEQRRRSKINERFQILRDLIPHSDQKRDTASFLLEVIEYVQYLQEKVQKYEGSYQNWSGEPTKLIPWRNSHWRMQTFVGHPHSVKNGSASGPTYSGKFDDNSISISPAMLASSQNPLDSHSGRDILQDADITNKVPLPMSLEGNLHASIHSDGVLDQSLHIPISDAQTTECPITNNASNQPEEMAIEGGTISVSSVYSEGFMNSLAQALQSTGLDLSQASISVQIDLGKRANKGMPLPIFKETGNPPSSHPAMANVGDLGSGDDSEQAKKRLRI 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23866431 23871558 - CcPI632755_08g012160.1 Cco08g1216 185690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1216 330 MobiDBLite consensus disorder prediction 295 330 - -
Cco08g1216 330 MobiDBLite consensus disorder prediction 44 62 - -
Cco08g1216 330 Gene3D - 47 119 IPR036638 GO:0046983(InterPro)
Cco08g1216 330 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 5 329 IPR044295 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro)
Cco08g1216 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 47 119 IPR036638 GO:0046983(InterPro)
Cco08g1216 330 SMART finulus 55 105 IPR011598 GO:0046983(InterPro)
Cco08g1216 330 FunFam BHLH domain class transcription factor 47 119 - -
Cco08g1216 330 MobiDBLite consensus disorder prediction 23 43 - -
Cco08g1216 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983(InterPro)
Cco08g1216 330 CDD bHLH_AtBIM_like 48 124 - -
Cco08g1216 330 MobiDBLite consensus disorder prediction 1 62 - -
Cco08g1216 330 Pfam Helix-loop-helix DNA-binding domain 51 100 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1732 Cco-Chr6:27810343 Cco08g1216 Cco-Chr8:23866431 7.80E-59 dispersed
Cco07g1687 Cco-Chr7:30858582 Cco08g1216 Cco-Chr8:23866431 1.10E-48 dispersed
Cco01g1743 Cco-Chr1:30198505 Cco08g1216 Cco-Chr8:23866431 4.00E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59794 PF00010 HLH 1.80E-13 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1216 - - - 0.0