Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1223 | ATGGCTCTTTTACAACGCCAAAAACCCCTTCAAATCGCCTCCAATCTCTTCCCCATCTGTAATTTTAGCTCCATTCGACCTTCCATTTCAATTCCTTTCTCATCCTCAAAAACCCATCATCAAAATGCGCTTCTTTCCTCTTCCACCACCAGCAGAACCTTCTCACTCTCAACCACTCCAAGAAGGATTTTGTGCGAACCCCCTAAAGGAAAGTACATCCACGACGATTATCTTGTGAAGAAGATGACGGCTGCCGAAGTGCAGGAGTTAGTGAAGGGGGAAAGAAATGTGCCGCTTATAATTGATTTTTATGCAACATGGTGTGGTCCCTGCATTCTAATGGCTCAAGAACTTGAAATGCTCGCTGTAGAGTACGAGAACAATGCAATGATCATCAAGGTCGACACAGATGACGAATATGAATTTTCACGTGATATGCAGGTTAGAGGACTGCCTACACTTTTCTTCATTAGCCCGGATCCAAATAAAGAAGCTATCCGCACTGAAGGTGCATCAAGCACACCTCTCGTCAACACTACTGGAAATTGGGGGGCTCCAAATCCGTACAAGACCGTCTTAGATCCTTCGATGGAGTTTCCGGGCCTCCTGAAAGAGAAAGAGAGAGGATCAAGGGATGTGGTCCACCAATACAACCATGCTTTCAAAGGGTTTTCAGCAATGCTAACTGAGGAAGAAGCTTCTTCTCTGTCTGGTATTGATTCAATCGTGTCGGTGTTCCCTGATCCGACGCTTCACCTCCACACTACACGTTCATGGGATTTCTTGGACTCCATCTCCGGCCTCCGCCCTCCCACGCCACTTCCGCCGCCGCATTCTTACCCCAGTTCATCGGATGTCATCGTCGGCGTCATTGACACCGGGATTTGGCCGGAGTCTCAATCTTTCAACGATGAGGGGATTGGAGAAATTCCATCTAAATGGAAAGGAGTCTGTATGGAGGCACCTGATTTCAAGAAGTCTAATTGCAACAGGAAGTTGATAGGTGCAAGATACTATAATGTTATAGAGCTCAATGGGAATGATAGCCATGTGGGGGCTCCGAAGGGCACACCGAGGGATTCGCTCGGCCATGGGACCCACACTGCGTCGATAGCAGCCGGAGCCAGAGTCCCCAATGCAAGTTACTTTGGCTTAGCGAGAGGGACGGCGAGAGGCGGTGGCATTCCTTCCACAAGGATTGCAAGCTATAAGGTTTGTGCTGGTGTTGGATGCTCTGGTGCTGCAATTCTCAAAGCCATTGATGATGCAGTTAGGGATGGAGTTGATATCATTTCGATCTCGATTGGGATTGGTTCCCCTTTGTTTCAATCTGATTATTTGAATGACCCAATTGCCATTGGAGCATTCCATGCCCAACTAATGGGAGTTTTGGTTGTCTGCTCTGGTGGGAATGATGGCCCTGACCCTAACACTGTGGGGAACGTTGCTCCTTGGATTTTCACTGTTGCTGCTTCTAATATTGACAGGGATTTCCAGTCCTCTGTGGTTCTTGGCAATGGGAAGACTTTTCATGGGACTGCTATAAATCTCTCAAATCTTACTAGCTCAAAGACTTATCCTCTTGTATTTGGAAAGGACGCTGCTGCTAAATTCACACCCATATCAGAAGCAAGGAATTGTTATCCAGGATCGCTGGATCGATCAAAAGTTGCAGGAAAGATTGTCGTTTGTGCCTCTGATGACTTCAGTACTTCAAGGACAATAAAGGAACTGGTCGTACAAGATGCTAAAGCCATGGGGTTAATACTGATCAATGAGGCATCAAAAACTGTGCCAATGGATTCAAACATTTTCCCATTTACACAAATTGGGAATTCAGATGGTCTTCAGATTCTTGAGTACATTAACTCCACCAAGAACCCAACAGCCACAATTCTCCGAACAGTGGAAGTTCAAAGACTCAAACCGGCTCCAATTGTGGCTTATTTCTCATCCAGAGGCCCATCTCCACTTACCGAAAACATTCTCAAGCCGGATATTACGGCTCCAGGAGTATCCATTTTAGCAGCTATGATTCCAAAGAGTGATGGAGATAGTGGTCCAATTGCAACTCAATACGATAATCAAAGGAAATTCATGAGAAACAGCACAAACAACCCTTCAAACCCACATGAGATGGGAGCTGGAGAAATAAGCCCCATAAAAGCTCTTAATCCTGGATTGGTTTTCGAAACTACGAACGAAGATTATCTTCGTTTCCTCTGTTATTACGGGTATTCAAACAAGGTCATAAGATCTGTGTCGAAACAAAACTTCAGCTGTCCGAAAACTTCAAAAGAAGATCTTATCTCCAATGTCAATTATCCATCCATCTCCATTGGCAAACTAGACAGTAAGCAAGCTGCCAAAGTAATTGAAAGAACTGTGACAAATGTAGGAGCTCCAGATGCCACTTACATTGCCAAGGTTCATTCTTCAGAGGGTTTAATAGTGAAAGTGAATCCAAGGAAGATTGTTTTCTCTGAGAAGGTAAAGAAAGTGACCTTCAAAGTTTCATTTTACGGCAAGGAGGCTCGCAGCGGCTACAACTTCGGGACGATCACGTGGCGGGACACTGCACATTCCGTTCGAACTTTTTTTGCTTTTCTTATGCAGCAATGGCCGTCGAGTTGGCTCCGCCGTATCGAAATTTCTCTAACAAACTTTTCCCTTTCCGATTCTGAATCTCTTCACCGATTCCGTAGCATGATTGTGCCTCTCGGGTTTAATAAGATTTTAAAATATCGAACATCAGTTGCTCCTCTTTCTCATTGTCCCAACAAAATCGTTGAGTTTTTGTTGTGTACTTCAGAAAATTGCTGCATTCTGAAGAACACAAGAGCTTTCAACCATGGATCAGAGAAGACAACATTTAGAAGCCGTGGTTTCGATCCCAATGCTTCCTTTTCATTCTTCCGAAACATGGGTTCTGTCCGAAAGAATGTCATGTTCCTCGAGAATTGGAACCCATCATGTAATGGCGTCAGTAGGTTTACTTTTGTTGTGGGGTACCGTTGGATTCATTCAGATAAATCTGTTGTGCCTTTAGAGAAAAGTGAGTGGAAATCAGCTACTGCTTCTACAGATGGAAGTAGAAGTGAGGAGGAGAAGAAGAAGACGAGGAAAAAGCTGAAGGGTAAAAGAGCAGTAGTAAGGTGGCTTAAATTTTTCAGGTGGAAGAAGAAGAAAGAGTATGAGAGAATGACAGCGGAAGAGAAAATTCTCTTCAAATTGAATAAGGCACGTAGAAAAGAGAAAAGGCTTGTTGAAGCGCTGGAAAAGATTGAGCCTGCCGATTCATCAGATACAACCCATGATCCCGAGATATTGACACCAGAGGAGCACTTCTACTTTCTGAAGATGGGTATCAAGGGAAAGAATTACGTTCCGGTTGGAAGACGTGGTATATACCAGGGTGTAATTCTGAATATGCATCTTCACTGGAAGAAGCATCAGACTGTGAAGGTGGTGGTAAAGACGTTCTCACCGGAAGAAGTCAAAGAGATTGCTGCCGAGCTAGCGAGATTGACTGGAGGGATGGTGCTTGACATTCATGAAGAGAATACCATAATTATGTATAGGGGGAAGAACTACTCACAGCCACCCACAGAGATAATGTCGCCAAGGGTCTCTCTCTCACGGAAGAAGGCTTTGGATAAATCTAAATATAGGGACGGCCTTCGGGCAGTAAGAAAGCACATTCCAAAACTTGAGCAAGACCTTAGGTTGTTACAATCTCAAGCCAAACTGAACTCGAAGAGCAATGGTGATTTTATTGAACATGTGCAAGAAACCGTCAACGACACAGATAAATCCAAGGCTATTTCAAGCCTCGGCTTGGAGGATTTGGACGAGTCAAAGGAAGCCTTAAGAGTTAGCAAACAATGGTCTGATGATTCTTCTCCTATGGATACAGGAATGAGCTCAGACTCAGAGGACTTGTCGGATATGTTTGAGACCGACTCCGATTCAGAAGCCGATGAGAAGATGAAACAGCCTCTATACTTGAAGGAGTTTGAAAAATTTGCAGCAGAAACTGAAGGCAAAACCGAAGACCTTCATGATCAACTTAGACAGGTATCCATGGACTCTAAGCAAGCCAAAACATTGGAGAAAGACGTCAATTCGCTTGAATTTGACGAGGTGGATCGATTGTTCCTGCGTTCAGCATCACTGTTAAAGAAGAGAAGAAGATAG | 4197 | 44.32 | MALLQRQKPLQIASNLFPICNFSSIRPSISIPFSSSKTHHQNALLSSSTTSRTFSLSTTPRRILCEPPKGKYIHDDYLVKKMTAAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMLAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGASSTPLVNTTGNWGAPNPYKTVLDPSMEFPGLLKEKERGSRDVVHQYNHAFKGFSAMLTEEEASSLSGIDSIVSVFPDPTLHLHTTRSWDFLDSISGLRPPTPLPPPHSYPSSSDVIVGVIDTGIWPESQSFNDEGIGEIPSKWKGVCMEAPDFKKSNCNRKLIGARYYNVIELNGNDSHVGAPKGTPRDSLGHGTHTASIAAGARVPNASYFGLARGTARGGGIPSTRIASYKVCAGVGCSGAAILKAIDDAVRDGVDIISISIGIGSPLFQSDYLNDPIAIGAFHAQLMGVLVVCSGGNDGPDPNTVGNVAPWIFTVAASNIDRDFQSSVVLGNGKTFHGTAINLSNLTSSKTYPLVFGKDAAAKFTPISEARNCYPGSLDRSKVAGKIVVCASDDFSTSRTIKELVVQDAKAMGLILINEASKTVPMDSNIFPFTQIGNSDGLQILEYINSTKNPTATILRTVEVQRLKPAPIVAYFSSRGPSPLTENILKPDITAPGVSILAAMIPKSDGDSGPIATQYDNQRKFMRNSTNNPSNPHEMGAGEISPIKALNPGLVFETTNEDYLRFLCYYGYSNKVIRSVSKQNFSCPKTSKEDLISNVNYPSISIGKLDSKQAAKVIERTVTNVGAPDATYIAKVHSSEGLIVKVNPRKIVFSEKVKKVTFKVSFYGKEARSGYNFGTITWRDTAHSVRTFFAFLMQQWPSSWLRRIEISLTNFSLSDSESLHRFRSMIVPLGFNKILKYRTSVAPLSHCPNKIVEFLLCTSENCCILKNTRAFNHGSEKTTFRSRGFDPNASFSFFRNMGSVRKNVMFLENWNPSCNGVSRFTFVVGYRWIHSDKSVVPLEKSEWKSATASTDGSRSEEEKKKTRKKLKGKRAVVRWLKFFRWKKKKEYERMTAEEKILFKLNKARRKEKRLVEALEKIEPADSSDTTHDPEILTPEEHFYFLKMGIKGKNYVPVGRRGIYQGVILNMHLHWKKHQTVKVVVKTFSPEEVKEIAAELARLTGGMVLDIHEENTIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDGLRAVRKHIPKLEQDLRLLQSQAKLNSKSNGDFIEHVQETVNDTDKSKAISSLGLEDLDESKEALRVSKQWSDDSSPMDTGMSSDSEDLSDMFETDSDSEADEKMKQPLYLKEFEKFAAETEGKTEDLHDQLRQVSMDSKQAKTLEKDVNSLEFDEVDRLFLRSASLLKKRRR | 1398 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 23940209 | 23957995 | + | CcPI632755_08g012230.1 | Cco08g1223 | 185697 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1223 | 1398 | SUPERFAMILY | YhbY-like | 1109 | 1201 | IPR035920 | - | |
Cco08g1223 | 1398 | Pfam | Subtilase family | 284 | 681 | IPR000209 | GO:0006508(InterPro)|GO:0008236(InterPro) | |
Cco08g1223 | 1398 | MobiDBLite | consensus disorder prediction | 1295 | 1313 | - | - | |
Cco08g1223 | 1398 | Gene3D | - | 1109 | 1206 | IPR035920 | - | |
Cco08g1223 | 1398 | FunFam | subtilisin-like protease SBT1.5 | 495 | 638 | - | - | |
Cco08g1223 | 1398 | Coils | Coil | 1227 | 1247 | - | - | |
Cco08g1223 | 1398 | ProSiteProfiles | Thioredoxin domain profile. | 45 | 244 | IPR013766 | - | |
Cco08g1223 | 1398 | PANTHER | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN | 704 | 863 | IPR045051 | - | |
Cco08g1223 | 1398 | Gene3D | Peptidase S8/S53 domain | 285 | 684 | IPR036852 | GO:0004252(InterPro)|GO:0006508(InterPro) | |
Cco08g1223 | 1398 | SMART | CRS1_YhbY_2 | 1110 | 1194 | IPR001890 | GO:0003723(InterPro) | |
Cco08g1223 | 1398 | Gene3D | Peptidase S8 propeptide/proteinase inhibitor I9 | 185 | 254 | IPR037045 | - | |
Cco08g1223 | 1398 | Gene3D | - | 741 | 870 | - | - | |
Cco08g1223 | 1398 | Pfam | PA domain | 525 | 618 | IPR003137 | - | |
Cco08g1223 | 1398 | MobiDBLite | consensus disorder prediction | 1292 | 1327 | - | - | |
Cco08g1223 | 1398 | SUPERFAMILY | Subtilisin-like | 279 | 728 | IPR036852 | GO:0004252(InterPro)|GO:0006508(InterPro) | |
Cco08g1223 | 1398 | CDD | PA_subtilisin_like | 501 | 632 | - | - | |
Cco08g1223 | 1398 | CDD | TRX_family | 85 | 174 | - | - | |
Cco08g1223 | 1398 | Pfam | Thioredoxin | 80 | 173 | IPR013766 | - | |
Cco08g1223 | 1398 | SUPERFAMILY | Thioredoxin-like | 78 | 171 | IPR036249 | - | |
Cco08g1223 | 1398 | FunFam | Thioredoxin-like protein CITRX, chloroplastic | 73 | 180 | - | - | |
Cco08g1223 | 1398 | ProSiteProfiles | Serine proteases, subtilase domain profile. | 258 | 724 | - | - | |
Cco08g1223 | 1398 | Pfam | Peptidase inhibitor I9 | 203 | 254 | IPR010259 | - | |
Cco08g1223 | 1398 | Pfam | CRS1 / YhbY (CRM) domain | 1110 | 1194 | IPR001890 | GO:0003723(InterPro) | |
Cco08g1223 | 1398 | Gene3D | Glutaredoxin | 72 | 179 | - | - | |
Cco08g1223 | 1398 | Gene3D | - | 495 | 639 | - | - | |
Cco08g1223 | 1398 | CDD | Peptidases_S8_3 | 251 | 494 | IPR034197 | - | |
Cco08g1223 | 1398 | ProSiteProfiles | CRM domain profile. | 1108 | 1205 | IPR001890 | GO:0003723(InterPro) | |
Cco08g1223 | 1398 | Pfam | Fibronectin type-III domain | 772 | 866 | IPR041469 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g1784 | Cco-Chr5:26485470 | Cco08g1223 | Cco-Chr8:23940209 | 7.60E-153 | dispersed | |
Cco08g1223 | Cco-Chr8:23940209 | Cco10g0393 | Cco-Chr10:4601647 | 6.00E-132 | dispersed | |
Cco08g1223 | Cco-Chr8:23940209 | Cco09g0103 | Cco-Chr9:902807 | 1.40E-125 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1223 | K25898 | - | csv:101220772 | 1161.36 |