Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1223 ATGGCTCTTTTACAACGCCAAAAACCCCTTCAAATCGCCTCCAATCTCTTCCCCATCTGTAATTTTAGCTCCATTCGACCTTCCATTTCAATTCCTTTCTCATCCTCAAAAACCCATCATCAAAATGCGCTTCTTTCCTCTTCCACCACCAGCAGAACCTTCTCACTCTCAACCACTCCAAGAAGGATTTTGTGCGAACCCCCTAAAGGAAAGTACATCCACGACGATTATCTTGTGAAGAAGATGACGGCTGCCGAAGTGCAGGAGTTAGTGAAGGGGGAAAGAAATGTGCCGCTTATAATTGATTTTTATGCAACATGGTGTGGTCCCTGCATTCTAATGGCTCAAGAACTTGAAATGCTCGCTGTAGAGTACGAGAACAATGCAATGATCATCAAGGTCGACACAGATGACGAATATGAATTTTCACGTGATATGCAGGTTAGAGGACTGCCTACACTTTTCTTCATTAGCCCGGATCCAAATAAAGAAGCTATCCGCACTGAAGGTGCATCAAGCACACCTCTCGTCAACACTACTGGAAATTGGGGGGCTCCAAATCCGTACAAGACCGTCTTAGATCCTTCGATGGAGTTTCCGGGCCTCCTGAAAGAGAAAGAGAGAGGATCAAGGGATGTGGTCCACCAATACAACCATGCTTTCAAAGGGTTTTCAGCAATGCTAACTGAGGAAGAAGCTTCTTCTCTGTCTGGTATTGATTCAATCGTGTCGGTGTTCCCTGATCCGACGCTTCACCTCCACACTACACGTTCATGGGATTTCTTGGACTCCATCTCCGGCCTCCGCCCTCCCACGCCACTTCCGCCGCCGCATTCTTACCCCAGTTCATCGGATGTCATCGTCGGCGTCATTGACACCGGGATTTGGCCGGAGTCTCAATCTTTCAACGATGAGGGGATTGGAGAAATTCCATCTAAATGGAAAGGAGTCTGTATGGAGGCACCTGATTTCAAGAAGTCTAATTGCAACAGGAAGTTGATAGGTGCAAGATACTATAATGTTATAGAGCTCAATGGGAATGATAGCCATGTGGGGGCTCCGAAGGGCACACCGAGGGATTCGCTCGGCCATGGGACCCACACTGCGTCGATAGCAGCCGGAGCCAGAGTCCCCAATGCAAGTTACTTTGGCTTAGCGAGAGGGACGGCGAGAGGCGGTGGCATTCCTTCCACAAGGATTGCAAGCTATAAGGTTTGTGCTGGTGTTGGATGCTCTGGTGCTGCAATTCTCAAAGCCATTGATGATGCAGTTAGGGATGGAGTTGATATCATTTCGATCTCGATTGGGATTGGTTCCCCTTTGTTTCAATCTGATTATTTGAATGACCCAATTGCCATTGGAGCATTCCATGCCCAACTAATGGGAGTTTTGGTTGTCTGCTCTGGTGGGAATGATGGCCCTGACCCTAACACTGTGGGGAACGTTGCTCCTTGGATTTTCACTGTTGCTGCTTCTAATATTGACAGGGATTTCCAGTCCTCTGTGGTTCTTGGCAATGGGAAGACTTTTCATGGGACTGCTATAAATCTCTCAAATCTTACTAGCTCAAAGACTTATCCTCTTGTATTTGGAAAGGACGCTGCTGCTAAATTCACACCCATATCAGAAGCAAGGAATTGTTATCCAGGATCGCTGGATCGATCAAAAGTTGCAGGAAAGATTGTCGTTTGTGCCTCTGATGACTTCAGTACTTCAAGGACAATAAAGGAACTGGTCGTACAAGATGCTAAAGCCATGGGGTTAATACTGATCAATGAGGCATCAAAAACTGTGCCAATGGATTCAAACATTTTCCCATTTACACAAATTGGGAATTCAGATGGTCTTCAGATTCTTGAGTACATTAACTCCACCAAGAACCCAACAGCCACAATTCTCCGAACAGTGGAAGTTCAAAGACTCAAACCGGCTCCAATTGTGGCTTATTTCTCATCCAGAGGCCCATCTCCACTTACCGAAAACATTCTCAAGCCGGATATTACGGCTCCAGGAGTATCCATTTTAGCAGCTATGATTCCAAAGAGTGATGGAGATAGTGGTCCAATTGCAACTCAATACGATAATCAAAGGAAATTCATGAGAAACAGCACAAACAACCCTTCAAACCCACATGAGATGGGAGCTGGAGAAATAAGCCCCATAAAAGCTCTTAATCCTGGATTGGTTTTCGAAACTACGAACGAAGATTATCTTCGTTTCCTCTGTTATTACGGGTATTCAAACAAGGTCATAAGATCTGTGTCGAAACAAAACTTCAGCTGTCCGAAAACTTCAAAAGAAGATCTTATCTCCAATGTCAATTATCCATCCATCTCCATTGGCAAACTAGACAGTAAGCAAGCTGCCAAAGTAATTGAAAGAACTGTGACAAATGTAGGAGCTCCAGATGCCACTTACATTGCCAAGGTTCATTCTTCAGAGGGTTTAATAGTGAAAGTGAATCCAAGGAAGATTGTTTTCTCTGAGAAGGTAAAGAAAGTGACCTTCAAAGTTTCATTTTACGGCAAGGAGGCTCGCAGCGGCTACAACTTCGGGACGATCACGTGGCGGGACACTGCACATTCCGTTCGAACTTTTTTTGCTTTTCTTATGCAGCAATGGCCGTCGAGTTGGCTCCGCCGTATCGAAATTTCTCTAACAAACTTTTCCCTTTCCGATTCTGAATCTCTTCACCGATTCCGTAGCATGATTGTGCCTCTCGGGTTTAATAAGATTTTAAAATATCGAACATCAGTTGCTCCTCTTTCTCATTGTCCCAACAAAATCGTTGAGTTTTTGTTGTGTACTTCAGAAAATTGCTGCATTCTGAAGAACACAAGAGCTTTCAACCATGGATCAGAGAAGACAACATTTAGAAGCCGTGGTTTCGATCCCAATGCTTCCTTTTCATTCTTCCGAAACATGGGTTCTGTCCGAAAGAATGTCATGTTCCTCGAGAATTGGAACCCATCATGTAATGGCGTCAGTAGGTTTACTTTTGTTGTGGGGTACCGTTGGATTCATTCAGATAAATCTGTTGTGCCTTTAGAGAAAAGTGAGTGGAAATCAGCTACTGCTTCTACAGATGGAAGTAGAAGTGAGGAGGAGAAGAAGAAGACGAGGAAAAAGCTGAAGGGTAAAAGAGCAGTAGTAAGGTGGCTTAAATTTTTCAGGTGGAAGAAGAAGAAAGAGTATGAGAGAATGACAGCGGAAGAGAAAATTCTCTTCAAATTGAATAAGGCACGTAGAAAAGAGAAAAGGCTTGTTGAAGCGCTGGAAAAGATTGAGCCTGCCGATTCATCAGATACAACCCATGATCCCGAGATATTGACACCAGAGGAGCACTTCTACTTTCTGAAGATGGGTATCAAGGGAAAGAATTACGTTCCGGTTGGAAGACGTGGTATATACCAGGGTGTAATTCTGAATATGCATCTTCACTGGAAGAAGCATCAGACTGTGAAGGTGGTGGTAAAGACGTTCTCACCGGAAGAAGTCAAAGAGATTGCTGCCGAGCTAGCGAGATTGACTGGAGGGATGGTGCTTGACATTCATGAAGAGAATACCATAATTATGTATAGGGGGAAGAACTACTCACAGCCACCCACAGAGATAATGTCGCCAAGGGTCTCTCTCTCACGGAAGAAGGCTTTGGATAAATCTAAATATAGGGACGGCCTTCGGGCAGTAAGAAAGCACATTCCAAAACTTGAGCAAGACCTTAGGTTGTTACAATCTCAAGCCAAACTGAACTCGAAGAGCAATGGTGATTTTATTGAACATGTGCAAGAAACCGTCAACGACACAGATAAATCCAAGGCTATTTCAAGCCTCGGCTTGGAGGATTTGGACGAGTCAAAGGAAGCCTTAAGAGTTAGCAAACAATGGTCTGATGATTCTTCTCCTATGGATACAGGAATGAGCTCAGACTCAGAGGACTTGTCGGATATGTTTGAGACCGACTCCGATTCAGAAGCCGATGAGAAGATGAAACAGCCTCTATACTTGAAGGAGTTTGAAAAATTTGCAGCAGAAACTGAAGGCAAAACCGAAGACCTTCATGATCAACTTAGACAGGTATCCATGGACTCTAAGCAAGCCAAAACATTGGAGAAAGACGTCAATTCGCTTGAATTTGACGAGGTGGATCGATTGTTCCTGCGTTCAGCATCACTGTTAAAGAAGAGAAGAAGATAG 4197 44.32 MALLQRQKPLQIASNLFPICNFSSIRPSISIPFSSSKTHHQNALLSSSTTSRTFSLSTTPRRILCEPPKGKYIHDDYLVKKMTAAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMLAVEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGASSTPLVNTTGNWGAPNPYKTVLDPSMEFPGLLKEKERGSRDVVHQYNHAFKGFSAMLTEEEASSLSGIDSIVSVFPDPTLHLHTTRSWDFLDSISGLRPPTPLPPPHSYPSSSDVIVGVIDTGIWPESQSFNDEGIGEIPSKWKGVCMEAPDFKKSNCNRKLIGARYYNVIELNGNDSHVGAPKGTPRDSLGHGTHTASIAAGARVPNASYFGLARGTARGGGIPSTRIASYKVCAGVGCSGAAILKAIDDAVRDGVDIISISIGIGSPLFQSDYLNDPIAIGAFHAQLMGVLVVCSGGNDGPDPNTVGNVAPWIFTVAASNIDRDFQSSVVLGNGKTFHGTAINLSNLTSSKTYPLVFGKDAAAKFTPISEARNCYPGSLDRSKVAGKIVVCASDDFSTSRTIKELVVQDAKAMGLILINEASKTVPMDSNIFPFTQIGNSDGLQILEYINSTKNPTATILRTVEVQRLKPAPIVAYFSSRGPSPLTENILKPDITAPGVSILAAMIPKSDGDSGPIATQYDNQRKFMRNSTNNPSNPHEMGAGEISPIKALNPGLVFETTNEDYLRFLCYYGYSNKVIRSVSKQNFSCPKTSKEDLISNVNYPSISIGKLDSKQAAKVIERTVTNVGAPDATYIAKVHSSEGLIVKVNPRKIVFSEKVKKVTFKVSFYGKEARSGYNFGTITWRDTAHSVRTFFAFLMQQWPSSWLRRIEISLTNFSLSDSESLHRFRSMIVPLGFNKILKYRTSVAPLSHCPNKIVEFLLCTSENCCILKNTRAFNHGSEKTTFRSRGFDPNASFSFFRNMGSVRKNVMFLENWNPSCNGVSRFTFVVGYRWIHSDKSVVPLEKSEWKSATASTDGSRSEEEKKKTRKKLKGKRAVVRWLKFFRWKKKKEYERMTAEEKILFKLNKARRKEKRLVEALEKIEPADSSDTTHDPEILTPEEHFYFLKMGIKGKNYVPVGRRGIYQGVILNMHLHWKKHQTVKVVVKTFSPEEVKEIAAELARLTGGMVLDIHEENTIIMYRGKNYSQPPTEIMSPRVSLSRKKALDKSKYRDGLRAVRKHIPKLEQDLRLLQSQAKLNSKSNGDFIEHVQETVNDTDKSKAISSLGLEDLDESKEALRVSKQWSDDSSPMDTGMSSDSEDLSDMFETDSDSEADEKMKQPLYLKEFEKFAAETEGKTEDLHDQLRQVSMDSKQAKTLEKDVNSLEFDEVDRLFLRSASLLKKRRR 1398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23940209 23957995 + CcPI632755_08g012230.1 Cco08g1223 185697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1223 1398 SUPERFAMILY YhbY-like 1109 1201 IPR035920 -
Cco08g1223 1398 Pfam Subtilase family 284 681 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco08g1223 1398 MobiDBLite consensus disorder prediction 1295 1313 - -
Cco08g1223 1398 Gene3D - 1109 1206 IPR035920 -
Cco08g1223 1398 FunFam subtilisin-like protease SBT1.5 495 638 - -
Cco08g1223 1398 Coils Coil 1227 1247 - -
Cco08g1223 1398 ProSiteProfiles Thioredoxin domain profile. 45 244 IPR013766 -
Cco08g1223 1398 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 704 863 IPR045051 -
Cco08g1223 1398 Gene3D Peptidase S8/S53 domain 285 684 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco08g1223 1398 SMART CRS1_YhbY_2 1110 1194 IPR001890 GO:0003723(InterPro)
Cco08g1223 1398 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 185 254 IPR037045 -
Cco08g1223 1398 Gene3D - 741 870 - -
Cco08g1223 1398 Pfam PA domain 525 618 IPR003137 -
Cco08g1223 1398 MobiDBLite consensus disorder prediction 1292 1327 - -
Cco08g1223 1398 SUPERFAMILY Subtilisin-like 279 728 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco08g1223 1398 CDD PA_subtilisin_like 501 632 - -
Cco08g1223 1398 CDD TRX_family 85 174 - -
Cco08g1223 1398 Pfam Thioredoxin 80 173 IPR013766 -
Cco08g1223 1398 SUPERFAMILY Thioredoxin-like 78 171 IPR036249 -
Cco08g1223 1398 FunFam Thioredoxin-like protein CITRX, chloroplastic 73 180 - -
Cco08g1223 1398 ProSiteProfiles Serine proteases, subtilase domain profile. 258 724 - -
Cco08g1223 1398 Pfam Peptidase inhibitor I9 203 254 IPR010259 -
Cco08g1223 1398 Pfam CRS1 / YhbY (CRM) domain 1110 1194 IPR001890 GO:0003723(InterPro)
Cco08g1223 1398 Gene3D Glutaredoxin 72 179 - -
Cco08g1223 1398 Gene3D - 495 639 - -
Cco08g1223 1398 CDD Peptidases_S8_3 251 494 IPR034197 -
Cco08g1223 1398 ProSiteProfiles CRM domain profile. 1108 1205 IPR001890 GO:0003723(InterPro)
Cco08g1223 1398 Pfam Fibronectin type-III domain 772 866 IPR041469 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1784 Cco-Chr5:26485470 Cco08g1223 Cco-Chr8:23940209 7.60E-153 dispersed
Cco08g1223 Cco-Chr8:23940209 Cco10g0393 Cco-Chr10:4601647 6.00E-132 dispersed
Cco08g1223 Cco-Chr8:23940209 Cco09g0103 Cco-Chr9:902807 1.40E-125 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1223 K25898 - csv:101220772 1161.36