Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1224 ATGTCCTCCGCCCATTCCCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCCCACCGCCGCCGCCCCCGCCGGCGTTGGCCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCTTCATCTCCACCATCATGCTCATCTCCTACGCTTGCATTCGCGTCAAATCCGCCCGCCCTCGCCCTCGCCCTAGACCTGCCGCCTCTCTCCCTTCCCCCGCCGCCGACAATGTGGTGGTTCTCATGGTCGGATTAGACGGCTCCATCATCGAATCCTACCCTAAGTTAGTCCTTGGAGAGAGCCGCCGTCTTCCCGCCCCTAATCACGGCCCTTGCTCCATTTGCCTCTCCGATTACAAGCCTTACGATTCTCTCCGCTGTATTCCTGATTGTCGCCATTGTTTTCACTCCGACTGCGTCGATGAATGGCTTCGTATGAGCGCTACTTGTCCTTTGTGTCGAAACTCCCCTGCTCCAACCCCTGTTGCTACTCCTCTCTCTGAGTTTGTGCCTCTGGCTTCCAATGCCAGGTGA 543 59.3 MSSAHSPSSSSSSSSSSSSSPTAAAPAGVGLGYGIAIAVSILVFISTIMLISYACIRVKSARPRPRPRPAASLPSPAADNVVVLMVGLDGSIIESYPKLVLGESRRLPAPNHGPCSICLSDYKPYDSLRCIPDCRHCFHSDCVDEWLRMSATCPLCRNSPAPTPVATPLSEFVPLASNAR 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23960290 23960832 + CcPI632755_08g012240.1 Cco08g1224 185698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1224 180 MobiDBLite consensus disorder prediction 1 21 - -
Cco08g1224 180 SMART ring_2 115 156 IPR001841 -
Cco08g1224 180 SUPERFAMILY RING/U-box 114 162 - -
Cco08g1224 180 Pfam Ring finger domain 115 157 IPR001841 -
Cco08g1224 180 CDD RING-H2_EL5-like 115 157 - -
Cco08g1224 180 PANTHER RING-H2 FINGER PROTEIN ATL67 17 179 IPR044289 GO:0016567(InterPro)|GO:0016740(InterPro)
Cco08g1224 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 162 IPR013083 -
Cco08g1224 180 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1262 Cco-Chr4:27970270 Cco08g1224 Cco-Chr8:23960290 6.60E-25 dispersed
Cco05g0157 Cco-Chr5:1226118 Cco08g1224 Cco-Chr8:23960290 2.10E-24 dispersed
Cco05g1050 Cco-Chr5:9281886 Cco08g1224 Cco-Chr8:23960290 3.80E-22 dispersed
Cco07g1584 Cco-Chr7:29864992 Cco08g1224 Cco-Chr8:23960290 5.80E-24 dispersed
Cco08g1224 Cco-Chr8:23960290 Cco10g1805 Cco-Chr10:31646214 2.40E-25 dispersed
Cco08g1224 Cco-Chr8:23960290 Cco05g0107 Cco-Chr5:888750 4.00E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1224 - - - 0.0