Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1226 ATGGCTACTGAGGGCAGTCCCAGGACTGATATCTCAACAGATGGGGACACAGATGAAAAAAGCCGGAGGCCTGATAGAGGCCAACTTACTCTTACTATGGCTTCTGATTCTAGTGACAGATCAAAGGATAAAACTGATCAGAAGACTCTTCGCCGGCTAGCACAAAATCGTGAGGCTGCAAGGAAAAGCCGATTGAGAAAAAAAGCATACGTTCAACAGCTAGAGAGCAGTCGATTAAAATTGACACAACTTGAGCAGGAGCTTCAGCGAGCACGACAGCAGGGAATTTTCATATCAAGCTCAGGTGATCAGACCCATTCAATGAGTGGAAATGGGGCCATGGCATTTGATGTAGAATATGCTCGATGGCTTGAGGATCACAACCGTCAATTGAACGAATTGAGATCAGCTGTTAATTCTCATGCAAGTGACCCGGAACTGCGTATTGTTGTCGATGGCATCTTGGTTCATTATGATGAGCTCTTTAGGCTCAAGGGAAATGCAGCAAAGGCTGACGTTTTCCATTTATTATCAGGCATGTGGAAAACACCTGCAGAAAGATGTTTTCTTTGGCTCGGGGGTTTTCGTTCATCCGAGCTCCTAAAGCTTCTTGTAAATCAACTGGAGCCTCTAACAGAGCAGCAGTTGGTGGGAATAACAAACTTGCAGCAATCATCGCAGCAGGCAGAAGATGCATTATCACAAGGGATGGAGGCCTTGCAACAGTCCCTGGCAGAGACATTGTCGAGTGGAGCTCTCGGCTCCTCTGGTTCGTCAGGGAACGTTGCAAACTACATGGGTCAAATGGCCATGGCCATGGGTAAACTTGGGACCCTCGAGGGCTTTATACGCCAAGCCGACAACTTGCGACAACAGACACTTCAACAAATGCACCGTATATTGACAACTCGTCAGTCTGCTCGTGCTCTTCTTGCCATACATGACTACTTCTCCAGGCTACGAGCTCTTAGTTCGCTCTGGCTTGCTCGTCCGAGAGAGTAA 1002 47.5 MATEGSPRTDISTDGDTDEKSRRPDRGQLTLTMASDSSDRSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQTHSMSGNGAMAFDVEYARWLEDHNRQLNELRSAVNSHASDPELRIVVDGILVHYDELFRLKGNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGALGSSGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTRQSARALLAIHDYFSRLRALSSLWLARPRE 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23976270 23980111 - CcPI632755_08g012260.1 Cco08g1226 185700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1226 333 FunFam BZIP family transcription factor 47 96 - -
Cco08g1226 333 Pfam bZIP transcription factor 48 88 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1226 333 MobiDBLite consensus disorder prediction 11 26 - -
Cco08g1226 333 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 51 66 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1226 333 Coils Coil 67 94 - -
Cco08g1226 333 SMART brlzneu 44 107 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1226 333 Gene3D - 47 99 - -
Cco08g1226 333 ProSiteProfiles DOG1 domain profile. 113 330 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Cco08g1226 333 PANTHER TRANSCRIPTION FACTOR TGA9 25 333 - -
Cco08g1226 333 MobiDBLite consensus disorder prediction 1 50 - -
Cco08g1226 333 SUPERFAMILY Leucine zipper domain 48 91 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1226 333 Coils Coil 124 144 - -
Cco08g1226 333 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 46 90 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1226 333 Pfam Seed dormancy control 130 205 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2958 Cco-Chr5:37094592 Cco08g1226 Cco-Chr8:23976270 3.60E-142 dispersed
Cco08g1226 Cco-Chr8:23976270 Cco10g1614 Cco-Chr10:29507372 2.20E-133 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59795 PF14144 DOG1 1.00E-31 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1226 K14431 - csv:101213210 593.964