Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1235 ATGAGCAGTTTGAGGACGGTGTGCAGGCCTCATGCCATGTTTTCTTCCTTCCTCTTTAGCAGCAGATGCCAATCTATGCCCAGTGTTTCGTTTCGGAACCCTAATAACAAGCGTCGCTTTTCACTTTTCTCTACCACCTTCAATTCCTCCTCAGGCTTTTCTCGGACCGAGAAGTGGTTCCGTATCAATCAGAGGAAGACGCTGGCCATGGCTTCCAATTGGGCTAACGAAAAATCTCCCTATGAAACTCTCGAGTTAGAGAGGGATGCTGATGAAGAACAGATAAAGAGTTCCTATAGGCGCTTGGCCAAATTTTATCATCCGGATGTTTATGATGGTAGAGGAACTCTTGAAGAAGGAGAAACAGCTGAAGCTAGATTCATCAAGATTCAAGCTGCTTATGAGTTGCTCATAGATGATAAGAAGCGGAGGCAGTATGATGTAGATAACCGAGTTAATCCAATGAAGGCATCTCAAGCATGGATGGAGTGGCTTATCAAAAAGCGCAAAGCTTTTGATCAACGGGGTGACATGGCAATAGTAGCTTGGGCTGAACAACAGCAGCGTGAGATGAATCTACGGGCTCGGCGCCTTTCTCGATCAAAGGTTGATCCAGACGAAGAGAAAAGATTACTGGCAAAAGAAAAGAAGGCGTCAATAGAGTATTTTAACAGCACACTGAAGCGCCACACACTTATCTTGAAGAAGAGGGATTTAATGCGAAAAAAAGCAGAGGAGGAAAAGAAGAAGGTAATAAGCCAACTCTTAGCTGAGGAGGGCCTCGAACTTGATACAGACGACGATGACAACCTGTAG 816 44.98 MSSLRTVCRPHAMFSSFLFSSRCQSMPSVSFRNPNNKRRFSLFSTTFNSSSGFSRTEKWFRINQRKTLAMASNWANEKSPYETLELERDADEEQIKSSYRRLAKFYHPDVYDGRGTLEEGETAEARFIKIQAAYELLIDDKKRRQYDVDNRVNPMKASQAWMEWLIKKRKAFDQRGDMAIVAWAEQQQREMNLRARRLSRSKVDPDEEKRLLAKEKKASIEYFNSTLKRHTLILKKRDLMRKKAEEEKKKVISQLLAEEGLELDTDDDDNL 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24141843 24143926 + CcPI632755_08g012350.1 Cco08g1235 185709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1235 271 CDD DnaJ 80 139 IPR001623 -
Cco08g1235 271 PRINTS DnaJ domain signature 122 142 IPR001623 -
Cco08g1235 271 PRINTS DnaJ domain signature 168 187 IPR001623 -
Cco08g1235 271 PRINTS DnaJ domain signature 81 99 IPR001623 -
Cco08g1235 271 PRINTS DnaJ domain signature 99 114 IPR001623 -
Cco08g1235 271 Gene3D DnaJ domain 65 164 IPR036869 -
Cco08g1235 271 ProSiteProfiles dnaJ domain profile. 79 150 IPR001623 -
Cco08g1235 271 FunFam Chaperone protein dnaJ 65 170 - -
Cco08g1235 271 SMART dnaj_3 78 142 IPR001623 -
Cco08g1235 271 SUPERFAMILY Chaperone J-domain 17 146 IPR036869 -
Cco08g1235 271 ProSitePatterns Nt-dnaJ domain signature. 127 146 IPR018253 -
Cco08g1235 271 Pfam DnaJ domain 80 147 IPR001623 -
Cco08g1235 271 PANTHER CO-CHAPERONE PROTEIN DJLA 80 267 IPR050817 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1235 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0361 Cco-Chr8:7236023 Cco08g1235 Cco-Chr8:24141843 2.20E-48 dispersed
Cco08g0362 Cco-Chr8:7236770 Cco08g1235 Cco-Chr8:24141843 1.10E-56 dispersed
Cco08g1235 Cco-Chr8:24141843 Cco10g2196 Cco-Chr10:35028793 4.40E-07 dispersed
Cco08g1235 Cco-Chr8:24141843 Cco05g2739 Cco-Chr5:35271672 9.00E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g345 . . . . Bpe02g00088 . . Bma01g02630 . . . . . . Sed04g0058 . . Bhi04g00721 Tan02g2350 Cmetu03g2083 . . . . Cla08g01081 Cam08g1532 Cec08g1108 Cco08g1235 Clacu08g1237 . Cre08g1018 . . . . . . . Cme03g01491 . . Bda11g00754 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00937 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005322 1 1 0 1 1 3 1 3 1 1 2 3 1 1 1 1 3 2 1 1 1 1 1 1 1 1 1 1 2 1 40