Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1238 ATGGATCCCTCCTCCACCAACTCTGTCAATGGCTTTTATACTTTTTTGACTCGAGGGATCGATGATCTTGAACGGGTTTACATTTCAAATAATTTCATGTCAATCCAATTCCTTCAAAGGGTTCTTTCACTGCTCCGATCATTTCATTCCCAATTGACACTTCTCGTCCAAAAGCTTCATTTGCCTGTAGGGGAGAAGTGGTTGGATGAGTATATGGATGAGAGTTCTAAGCTGTGGGACGCCTGTCATGTCCTCAAATCAGGCATTTCTGGAATCGAAAATTTCTACTCTGCTGGGTTCAATATCACTTCCTCTCTCGAAACTCATCGCCATCTGAGTTCGCAACTTTCTCGCCAGGTGATTAGGGCAATATCAGGGTGTCGAAGGGAAGCGGTGGGATTGGAAGAGGAGAATCGGGCACTGATGGAAGCAAGAATTCAACCGCTATCTCTGCGGTTCGATGAGAAAGTATCGATCGAATCAAAGCTGAACGGATTCAATGGATTCAGGGGAGTTCTGTATGCAATGAGAAATGTGAGCTCCCTCCTCCTAATGATCTTACTCTACGGGCTGGTTTACTGTTGGCCGGAATCGAATTTTGTAAGAGGAGGGTATGAAGGGTGTCTGTTTTTCGGTTCAGCTTTTATGATATCGACGGCGAGATTGCAGGAGAGAGTCGCCGGAGAAATCAACCAGATGAACGGAAGGCCTGGGATTTTGCTGTACGAGTTTAGGAGGTCGAAGATGGCGATGGAGGAATTGAGGGCGGAATTGGAGAGGAGGGTGGGGATGGGGTCGCAAGGAGTGGTGGAATGGGAAACAGAGATTGGAATTAGAGAAAGGGTTGAGAATTTGAGAGCTTGTTTTGGGGTACTGAGATCTGGAGCTGAGAATATTGTTTGCCAACTTGATGATTTCATTGATGAAATCGTTGAAGGCAGGAAGAAGCTTTTGGACTTTTGTAGCCACAGCACACAATTGAAAAATGTGAGAACGGAGAATTCCAAGTGCAAGCAAATGAAAGACCCAGGCAATCATCTTGTTACCATGTTGAGCAACGTGAAGCCGAGCAGTTGTGCATTTGAATCTCAAGAAAATTGGATGTTGTCAAATCCTCACATTTCAACCGAAAAAAATCTCACACCATTCCTTGACTATGTAATTGCTATTTCAGTACCTATACTCATTCTCAACTTTATACCACCGGCAATACCGCTGTATCCTGCCAAATCTTCAAGTTCAGAGTTTCCAGGAGAGCCTTCCAGTTCCATGGGAGCACGAGCACAAGAAACAGCGCCGAAATCGGAGGACGTAAACGGAATAGGGAAGGTGAATGCGGAACGCGGCGTTTCGAAATCTGGAAAGGCTTGCTTGAACCTCGGGTTGGGCTTCGGCCCAATATTAAAACTTCAAAACTCAAGCCCAAAGTCTTTGAGCCAACGAAGGAATGCCGTCAAACCCGGTATCTTGAGCCAAGAAAAAGAAAGGGTAGAGCACCCGACGGGGATTGATTGCGTGGCTGACTTCTTGTGCAACCGAGCTCTTCTAATGGAGTCGTCGTCTTCCTCGTTTTCATCTTTCGAGTATCCTCTTTCTCAGTGGGATTATCTCGATCTATTCATACTACGCCCGATCCTTGCAGTTGTGTTCACTTTCTCCTTGATTTCTCTCGGTTGGTTTTTGGCGTGGAAGCTCGTTCTTGTTCACGTCCCTCTGGTGCAAGAAATTTTTGGTTTGCGTAAGAAACCCGTGAAGCCGAAGCCTCCGACGCGCCGGTTATCGAAGTTTTATGATAGTCTGAATTCCCAAACTTCAGCTTCTGGCTGTCACTACTCATCTCGCAGCCAAATTTGGTCGCACACTTCTCTTGCCTACGATCTTGCAACTCATCTCGGTCACCATTTCCACTTTCAGAAACAAGTAAATGTTGGCCTCAGTAATAGAAAGGTTTTCTGTTTACAGATGTATGTTTTGAGCTTGGAGGCCATCTTAACTGAATTGCAGAACGTAGCCCAAGAAAAAGAAAGCAGTACTGGCCAATTGAGAAATCAGTCACCATCGCGAGCGCCCATTTTGAACGATAACGTGGCGGAAGTTTCAGCAGTACAGTCTACATTGTACAGATTCGAGATTCTCCATTGTCTCCATCTGCTTCTCGCTGCTTTCCGTCTGCTTCTCTGCTGCTTTCCATCATCCATGGCTCCTACACAGACATAG 2217 45.83 MDPSSTNSVNGFYTFLTRGIDDLERVYISNNFMSIQFLQRVLSLLRSFHSQLTLLVQKLHLPVGEKWLDEYMDESSKLWDACHVLKSGISGIENFYSAGFNITSSLETHRHLSSQLSRQVIRAISGCRREAVGLEEENRALMEARIQPLSLRFDEKVSIESKLNGFNGFRGVLYAMRNVSSLLLMILLYGLVYCWPESNFVRGGYEGCLFFGSAFMISTARLQERVAGEINQMNGRPGILLYEFRRSKMAMEELRAELERRVGMGSQGVVEWETEIGIRERVENLRACFGVLRSGAENIVCQLDDFIDEIVEGRKKLLDFCSHSTQLKNVRTENSKCKQMKDPGNHLVTMLSNVKPSSCAFESQENWMLSNPHISTEKNLTPFLDYVIAISVPILILNFIPPAIPLYPAKSSSSEFPGEPSSSMGARAQETAPKSEDVNGIGKVNAERGVSKSGKACLNLGLGFGPILKLQNSSPKSLSQRRNAVKPGILSQEKERVEHPTGIDCVADFLCNRALLMESSSSSFSSFEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEIFGLRKKPVKPKPPTRRLSKFYDSLNSQTSASGCHYSSRSQIWSHTSLAYDLATHLGHHFHFQKQVNVGLSNRKVFCLQMYVLSLEAILTELQNVAQEKESSTGQLRNQSPSRAPILNDNVAEVSAVQSTLYRFEILHCLHLLLAAFRLLLCCFPSSMAPTQT 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24155278 24165521 - CcPI632755_08g012380.1 Cco08g1238 185712

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1238 738 MobiDBLite consensus disorder prediction 414 429 - -
Cco08g1238 738 MobiDBLite consensus disorder prediction 410 439 - -
Cco08g1238 738 PANTHER BPS1-LIKE PROTEIN 5 319 - -
Cco08g1238 738 Pfam Domain of unknown function (DUF4750) 534 586 IPR031851 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1238 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1125 Cco-Chr5:10243744 Cco08g1238 Cco-Chr8:24155278 1.00E-77 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g341 . Blo12g00692 . Bda03g00511 Bpe02g00086 Bpe04g00467 . Bma01g02632 Cmo05g00502 . . . . . Sed04g0056 . Cpe07g00117 Bhi04g00715 Tan02g2354 Cmetu03g0634 . Hepe10g0527 . . Cla08g01085 Cam08g1537 Cec08g1111 Cco08g1238 Clacu08g1240 . Cre08g1021 Cone4ag1364 Cone7ag1567 . . . . . Cme03g01497 . . Bda11g00753 . Bpe02g01610 . . Bma02g00148 . . . Cma12g00138 Cma05g00479 Car05g00427 . Cpe11g00419 . . . . . . . . . . . . . . . Lsi08g00942 . Chy03g01008 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003079 3 1 4 5 4 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 2 1 1 1 1 2 1 2 52