Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1249 ATGGAGCATTTTCAGAACGACGATCTTGCGTATATTGTGGATGATTATTATGAAGTCGATGATTTTGACGACGGTCAATTTTTCTCTGACGATGAATTTCATACTGATCAGAATACGGAGCATATAGACTCCGACTTTGAGGACGACATCGATAGAAGCACGCCGAGGACAGATACCTCTGCTTTGGATGTTAGGAATGGGAAAGATATCCAGGGAATACCTTGGGAGAGGTTCACCTTTACTAGGGATACCTATCGGGAAAATCGTTTGAGCCAGTACAAGAACTATGAGAGCCTGTCAAGCTCTCGAGCGGAACTGGAAAAGGAATGCTTGCAAGTGGAGAAGGGGAATAATTTTTATGACTTCCAGTTCAATACGAGGCTTGTTAAATCAACAATTGTTCATTTTCAGCTAAGAAATCTCTTGTGGGCAACTTCTAAGCATGATGTTTACCTTATGCAAAACTTCTCAGTTATGCACTGGTCTTCATTGCTTCGGAGAGGCAAAGAAGTACTCAATGTGGCTAAACAAATTGTTCCCACTATGAAACAACCTGGAGTCTCGTCCCAGTCTTTGTCCAGAGTGCAGATAAGTACAATGACAGTTAAGGAGAACTTAATCGTGGCTGGTGGTTTTCAAGGGGAACTAATTTGCAAGTACTTGGATCATCCTGGAGTTGCATTTTGCACCAAAATGACAACAGAAGAAAATGCAATTACAAACGCTGTTGATATATTTCATAATCCAGTTGGTGCATTGAGGGTCGTCACAGCAAATAATGACGCAAAAGTAAGGATTTATGATGCCAAGACTTTTGCTTGCCTCAACGGCTTCACATTTGGCTGGTCCGTAAATAACACCTCTGTTAATCCAGATGGAAAGATGCTTGCAGTGCTTGGAGACAGCACAGAGTGTCTGCTTGCAGATGCCAACTCTGGCAAAGTGATCGAGAGCCTGAAAGGGCACTTGGATTACTCGTTTGCTTCTGCGTGGCACCCTGATGGATGCATTTTAGCGACTGGGAACCAAGATACCACCTGCAGGCTATGGGACATAAGGAATACGTCCAAGTCCCTAGCTGTGCTCAAGGGAAGAATGGGAGCAATCAGATGTGTGAAATTCAGCTCTGACGGTAAATTCCTGGCAACAGCAGAGCCTGCAGATTTCGTCCATATTTACGAGAGTCGCACAGGTTATGAACAAGCACAAGAAATCGATCTGTTTGGTGAAATTGCTGGAATATCATATAGTCCGGACACAGAAGCTCTATTTGTTGGCGTGGCTGATCGAACCTACGGTAGCCTCATTAATGTCCTGAGAAAAAGAGGTCTGCCTGAAGTTTTCCCTTTTAGTAAATACTTTGGGTGTGCTGTTGGAGTTGGTCGCATTTCGACCTCGTTTCTCTTGTCGCTGTCTTGTTTTGTTGGGCGTTGGAATGAATATGGTCAGTCCATTATGAATAGATAA 1467 43.49 MEHFQNDDLAYIVDDYYEVDDFDDGQFFSDDEFHTDQNTEHIDSDFEDDIDRSTPRTDTSALDVRNGKDIQGIPWERFTFTRDTYRENRLSQYKNYESLSSSRAELEKECLQVEKGNNFYDFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNFSVMHWSSLLRRGKEVLNVAKQIVPTMKQPGVSSQSLSRVQISTMTVKENLIVAGGFQGELICKYLDHPGVAFCTKMTTEENAITNAVDIFHNPVGALRVVTANNDAKVRIYDAKTFACLNGFTFGWSVNNTSVNPDGKMLAVLGDSTECLLADANSGKVIESLKGHLDYSFASAWHPDGCILATGNQDTTCRLWDIRNTSKSLAVLKGRMGAIRCVKFSSDGKFLATAEPADFVHIYESRTGYEQAQEIDLFGEIAGISYSPDTEALFVGVADRTYGSLINVLRKRGLPEVFPFSKYFGCAVGVGRISTSFLLSLSCFVGRWNEYGQSIMNR 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24275205 24280044 + CcPI632755_08g012490.1 Cco08g1249 185723

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1249 488 FunFam WD-40 repeat family protein 232 447 - -
Cco08g1249 488 ProSiteProfiles Trp-Asp (WD) repeats profile. 319 360 IPR001680 GO:0005515(InterPro)
Cco08g1249 488 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 319 354 - -
Cco08g1249 488 Gene3D - 171 447 IPR015943 GO:0005515(InterPro)
Cco08g1249 488 SMART WD40_4 213 268 IPR001680 GO:0005515(InterPro)
Cco08g1249 488 SMART WD40_4 271 309 IPR001680 GO:0005515(InterPro)
Cco08g1249 488 SMART WD40_4 312 351 IPR001680 GO:0005515(InterPro)
Cco08g1249 488 SMART WD40_4 355 394 IPR001680 GO:0005515(InterPro)
Cco08g1249 488 MobiDBLite consensus disorder prediction 38 59 - -
Cco08g1249 488 Pfam WD domain, G-beta repeat 313 351 IPR001680 GO:0005515(InterPro)
Cco08g1249 488 Pfam WD domain, G-beta repeat 357 384 IPR001680 GO:0005515(InterPro)
Cco08g1249 488 ProSitePatterns Trp-Asp (WD) repeats signature. 338 352 IPR019775 -
Cco08g1249 488 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 5 442 - -
Cco08g1249 488 SUPERFAMILY WD40 repeat-like 203 434 IPR036322 GO:0005515(InterPro)
Cco08g1249 488 MobiDBLite consensus disorder prediction 38 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1249 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1249 Cco-Chr8:24275205 Cco11g1588 Cco-Chr11:28783525 4.00E-184 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g386 . Blo12g00699 . Bda03g00499 . Bpe04g00454 . . Cmo05g00510 Cmo12g00116 . . . Car12g00136 . . Cpe07g00123 Bhi04g00741 . . . . . . Cla08g01095 Cam08g1549 Cec08g1122 Cco08g1249 Clacu08g1251 . Cre08g1033 . . . Cone20ag0496 . Csa04g01842 . Cme03g01509 . . . . . . . . . . Cmo09g00636 Cma12g00147 Cma05g00488 Car05g00436 . Cpe11g00427 . . . . . . . . . . . . . . . Lsi08g00951 . Chy07g00699 Cme07g00918
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001293 1 12 1 1 1 1 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 1 2 2 5 2 1 74