Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1250 ATGGCTGCTTTGATGGATTTGTATGGTTGCAGAGAGTTTCAGTCAGATCCATATGGTGGTGAATTAATGGAAGCACTTGAACCTTTTATGAAAGCTGCTTCCTCTTCTTATTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCCGGATTTCTCTTTCTCTTCTTCCATCCAACCAGAGTCCACTTCTTACCCTTCTGATTGCTCTCCTCCGATGACCCATTTATTTTCCGGTGGGTTTTCGGGTCAAGATTTCCATGGCGTAGAGCAATCAGCTTCTATTGGACTCAATTACTTGACCCCTTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTCCAGACACAAATCCAGCCAGTTTGGGGACAGATCAACAACCAAGTAGCGAGAAATCAGAGCAACAGCGCTGGAAATTTGCTTGGACCGAAGGGGATTCCGATGAAACACGTTGGATCTCCACCGAAATCCACGAAGCTTTATCGAGGCGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCGGAGATCCGTCTACCGAGGAACAGAACTCGGCTATGGCTCGGCACCTTCGACACCGCAGAAGAAGCCGCTTTAGCCTATGACAAAGCCGCTTACAAGCTCCGAGGCGACTTCGCCAGACTCAATTTCCCTCACCTCAAGCACCACGGCTCCTCCGTAGGCGGCGATTTCGGCGAGTACAAGCCGTTACACTCAGCCGTCGACGCCAAGCTCGAAGCCATCTGCCAAACCTTGGCAGAGTCGCAGAAACAGGGGAAATCGGATCGAAGGAAATCGAAATCATCGGGCTCTTCTACCGTCGGATCGGAGTCTCAGACGCCGACGGTGATCGATTCCGACGACGATCTGAAGACGGCGGATGTCAGATCAAGCGGATCGGAGATCTGTTGCAAGGCGGAGAACTCCTCGTCGCCGGTTTCGGCCGAGAGTGATGAGTCAGCAGGGTCTTCGCCTTTATCGGATCTGACGTTCCCGGATCTGACGGAATCGCCATGGGAACAATCTACAGAAAGCTGTTTGTTGCAGAAATATCCATCGGAAATTGATTGGGCTTCGATTTTAACTTCTTGA 1092 50.09 MAALMDLYGCREFQSDPYGGELMEALEPFMKAASSSYFPSSSSSSSSSSFPDFSFSSSIQPESTSYPSDCSPPMTHLFSGGFSGQDFHGVEQSASIGLNYLTPFQIQQIQSQFGLQTQIQPVWGQINNQVARNQSNSAGNLLGPKGIPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQKQGKSDRRKSKSSGSSTVGSESQTPTVIDSDDDLKTADVRSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFPDLTESPWEQSTESCLLQKYPSEIDWASILTS 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24299058 24300149 + CcPI632755_08g012500.1 Cco08g1250 185724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1250 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 360 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cco08g1250 363 MobiDBLite consensus disorder prediction 302 345 - -
Cco08g1250 363 FunFam Ethylene-responsive transcription factor 2 160 219 - -
Cco08g1250 363 SUPERFAMILY DNA-binding domain 161 219 IPR016177 GO:0003677(InterPro)
Cco08g1250 363 PRINTS Ethylene responsive element binding protein signature 184 200 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1250 363 PRINTS Ethylene responsive element binding protein signature 162 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1250 363 ProSiteProfiles AP2/ERF domain profile. 161 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1250 363 CDD AP2 160 220 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1250 363 Pfam AP2 domain 161 210 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1250 363 MobiDBLite consensus disorder prediction 268 286 - -
Cco08g1250 363 Gene3D AP2/ERF domain 161 219 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1250 363 SMART rav1_2 161 224 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1250 363 MobiDBLite consensus disorder prediction 254 345 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0196 Cco-Chr1:1885623 Cco08g1250 Cco-Chr8:24299058 6.10E-29 dispersed
Cco02g0117 Cco-Chr2:1302447 Cco08g1250 Cco-Chr8:24299058 1.10E-27 dispersed
Cco07g1578 Cco-Chr7:29767753 Cco08g1250 Cco-Chr8:24299058 3.20E-33 dispersed
Cco08g1250 Cco-Chr8:24299058 Cco10g1695 Cco-Chr10:30488875 3.80E-22 dispersed
Cco11g1590 Cco-Chr11:28799486 Cco08g1250 Cco-Chr8:24299058 9.00E-88 transposed
Cco04g1652 Cco-Chr4:31796602 Cco08g1250 Cco-Chr8:24299058 2.20E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59797 PF00847 AP2 4.80E-15 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1250 K09286 - csv:101222833 586.645