Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1250 | ATGGCTGCTTTGATGGATTTGTATGGTTGCAGAGAGTTTCAGTCAGATCCATATGGTGGTGAATTAATGGAAGCACTTGAACCTTTTATGAAAGCTGCTTCCTCTTCTTATTTTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTTTCCGGATTTCTCTTTCTCTTCTTCCATCCAACCAGAGTCCACTTCTTACCCTTCTGATTGCTCTCCTCCGATGACCCATTTATTTTCCGGTGGGTTTTCGGGTCAAGATTTCCATGGCGTAGAGCAATCAGCTTCTATTGGACTCAATTACTTGACCCCTTTTCAGATCCAACAGATCCAATCTCAATTCGGTCTCCAGACACAAATCCAGCCAGTTTGGGGACAGATCAACAACCAAGTAGCGAGAAATCAGAGCAACAGCGCTGGAAATTTGCTTGGACCGAAGGGGATTCCGATGAAACACGTTGGATCTCCACCGAAATCCACGAAGCTTTATCGAGGCGTGAGGCAAAGGCATTGGGGAAAATGGGTGGCGGAGATCCGTCTACCGAGGAACAGAACTCGGCTATGGCTCGGCACCTTCGACACCGCAGAAGAAGCCGCTTTAGCCTATGACAAAGCCGCTTACAAGCTCCGAGGCGACTTCGCCAGACTCAATTTCCCTCACCTCAAGCACCACGGCTCCTCCGTAGGCGGCGATTTCGGCGAGTACAAGCCGTTACACTCAGCCGTCGACGCCAAGCTCGAAGCCATCTGCCAAACCTTGGCAGAGTCGCAGAAACAGGGGAAATCGGATCGAAGGAAATCGAAATCATCGGGCTCTTCTACCGTCGGATCGGAGTCTCAGACGCCGACGGTGATCGATTCCGACGACGATCTGAAGACGGCGGATGTCAGATCAAGCGGATCGGAGATCTGTTGCAAGGCGGAGAACTCCTCGTCGCCGGTTTCGGCCGAGAGTGATGAGTCAGCAGGGTCTTCGCCTTTATCGGATCTGACGTTCCCGGATCTGACGGAATCGCCATGGGAACAATCTACAGAAAGCTGTTTGTTGCAGAAATATCCATCGGAAATTGATTGGGCTTCGATTTTAACTTCTTGA | 1092 | 50.09 | MAALMDLYGCREFQSDPYGGELMEALEPFMKAASSSYFPSSSSSSSSSSFPDFSFSSSIQPESTSYPSDCSPPMTHLFSGGFSGQDFHGVEQSASIGLNYLTPFQIQQIQSQFGLQTQIQPVWGQINNQVARNQSNSAGNLLGPKGIPMKHVGSPPKSTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAYKLRGDFARLNFPHLKHHGSSVGGDFGEYKPLHSAVDAKLEAICQTLAESQKQGKSDRRKSKSSGSSTVGSESQTPTVIDSDDDLKTADVRSSGSEICCKAENSSSPVSAESDESAGSSPLSDLTFPDLTESPWEQSTESCLLQKYPSEIDWASILTS | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 24299058 | 24300149 | + | CcPI632755_08g012500.1 | Cco08g1250 | 185724 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1250 | 363 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 16 | 360 | IPR051758 | GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
Cco08g1250 | 363 | MobiDBLite | consensus disorder prediction | 302 | 345 | - | - | |
Cco08g1250 | 363 | FunFam | Ethylene-responsive transcription factor 2 | 160 | 219 | - | - | |
Cco08g1250 | 363 | SUPERFAMILY | DNA-binding domain | 161 | 219 | IPR016177 | GO:0003677(InterPro) | |
Cco08g1250 | 363 | PRINTS | Ethylene responsive element binding protein signature | 184 | 200 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1250 | 363 | PRINTS | Ethylene responsive element binding protein signature | 162 | 173 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1250 | 363 | ProSiteProfiles | AP2/ERF domain profile. | 161 | 218 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1250 | 363 | CDD | AP2 | 160 | 220 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1250 | 363 | Pfam | AP2 domain | 161 | 210 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1250 | 363 | MobiDBLite | consensus disorder prediction | 268 | 286 | - | - | |
Cco08g1250 | 363 | Gene3D | AP2/ERF domain | 161 | 219 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1250 | 363 | SMART | rav1_2 | 161 | 224 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco08g1250 | 363 | MobiDBLite | consensus disorder prediction | 254 | 345 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g0196 | Cco-Chr1:1885623 | Cco08g1250 | Cco-Chr8:24299058 | 6.10E-29 | dispersed | |
Cco02g0117 | Cco-Chr2:1302447 | Cco08g1250 | Cco-Chr8:24299058 | 1.10E-27 | dispersed | |
Cco07g1578 | Cco-Chr7:29767753 | Cco08g1250 | Cco-Chr8:24299058 | 3.20E-33 | dispersed | |
Cco08g1250 | Cco-Chr8:24299058 | Cco10g1695 | Cco-Chr10:30488875 | 3.80E-22 | dispersed | |
Cco11g1590 | Cco-Chr11:28799486 | Cco08g1250 | Cco-Chr8:24299058 | 9.00E-88 | transposed | |
Cco04g1652 | Cco-Chr4:31796602 | Cco08g1250 | Cco-Chr8:24299058 | 2.20E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59797 | PF00847 | AP2 | 4.80E-15 | CL0081 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1250 | K09286 | - | csv:101222833 | 586.645 |