Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1252 ATGACCAACCAGAAAGCTTCTCTTCCCAAAGCCAAATCACGAATTGGTGTGGCCTTTACAGTCGCTAGAATTGGGGGATTTATGGCTAATATTTCTAAGAAAAAGGTTTTGAAAAGAACTGAAAATGGCGGTGGCGGTGGCCGAGGCAGAGCCATTGCTTCCTCTGTTGATTTGATGAGAGCTTCTTCTCCAACTCGTCTTAACTCTCCTATTTCTCTTTCCCAATCTCCTTGGATTTTTCAACTTCCTTCTGCACTCAACATGTTCGACCAAATTACAACTGCCTCTAAAGGCAAACAAATTGTCATGTTTTTGGATTACGATGGCACTCTTTCCCCTATTGTTGAAGATCCTGATAGAGCATACATGACCAATGAGATGAGAACTGCAGTAAAAAACATTGCTATGTGTTTTCCAACCGCCATAGTCAGCGGAAGATGCAGAGACAAGGTTTATGAATTTGTTGGATTGGCAGAGTTGTTCTATGCAGGGAGCCATGGAATGGACATACAAGGCCCAACAAAAGGCTACAATAATAAAAACAAGAAAGGCAATGAAGCAGTGCTTTTCCAACCGGCAAGTGAGCTGCTGCCCATGATTGAAGAGGTACATAAAACCTTGTCAGACATAACAAAGTCCATTAATGGAGCTAAAGTGGAAAACAACAAGTTCTGTATTTCTGTGCATTTTCGCTGCGTCGAGGAAAAAAAATGGGGAGCATTGGCAGAGCAAGTAAAATCGGTGGTTAATCAATATCCTAAATTGATTCTGAGTTTAGGAAGAAAGGTACTAGAGATTCGGCCAGCAATCAAATGGGACAAAGGCAAAGCTTTGGAATTTTTGCTTGAGTCATTAGGGTTTGCAAATTCTTGCGATGTTTTGCCGGTTTATATTGGAGATGATCGTACCGACGAAGATGCATTCAAGGTTTTGCAAAGTAAAGGATTAGGGTTTGGAATCCTTGTGTCAAAATTCCCCAAGGAAACTTGTGCTTCTTATTCCTTGCAAGAACCATCCGAGGTAGAGGAGTTTCTTTGTCGTCTTGTAGATTGGAAAAGATCAATGGGAACATTATTATCCCATTCCACATTATCTGATTAA 1101 40.96 MTNQKASLPKAKSRIGVAFTVARIGGFMANISKKKVLKRTENGGGGGRGRAIASSVDLMRASSPTRLNSPISLSQSPWIFQLPSALNMFDQITTASKGKQIVMFLDYDGTLSPIVEDPDRAYMTNEMRTAVKNIAMCFPTAIVSGRCRDKVYEFVGLAELFYAGSHGMDIQGPTKGYNNKNKKGNEAVLFQPASELLPMIEEVHKTLSDITKSINGAKVENNKFCISVHFRCVEEKKWGALAEQVKSVVNQYPKLILSLGRKVLEIRPAIKWDKGKALEFLLESLGFANSCDVLPVYIGDDRTDEDAFKVLQSKGLGFGILVSKFPKETCASYSLQEPSEVEEFLCRLVDWKRSMGTLLSHSTLSD 366
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24330553 24333095 + CcPI632755_08g012520.1 Cco08g1252 185726

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1252 366 CDD HAD_TPP 102 343 - -
Cco08g1252 366 FunFam Trehalose 6-phosphate phosphatase 101 188 - -
Cco08g1252 366 FunFam Trehalose 6-phosphate phosphatase 199 357 - -
Cco08g1252 366 FunFam Trehalose 6-phosphate phosphatase 193 269 - -
Cco08g1252 366 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 42 355 IPR044651 GO:0004805(PANTHER)|GO:0004805(InterPro)|GO:0005992(InterPro)|GO:0005992(PANTHER)
Cco08g1252 366 NCBIfam HAD-IIB family hydrolase 103 312 IPR006379 -
Cco08g1252 366 Pfam Trehalose-phosphatase 104 339 IPR003337 GO:0005992(InterPro)
Cco08g1252 366 NCBIfam trehalose-phosphatase 99 349 IPR003337 GO:0005992(InterPro)
Cco08g1252 366 Gene3D - 193 359 IPR023214 -
Cco08g1252 366 Gene3D - 101 189 IPR023214 -
Cco08g1252 366 SUPERFAMILY HAD-like 102 351 IPR036412 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1252 K01087 - - csv:101223071 661.373
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1027 Cco-Chr7:23553705 Cco08g1252 Cco-Chr8:24330553 1.00E-118 dispersed
Cco08g1252 Cco-Chr8:24330553 Cco10g0298 Cco-Chr10:3546176 2.70E-92 dispersed
Cco04g1651 Cco-Chr4:31776348 Cco08g1252 Cco-Chr8:24330553 2.30E-118 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g389 . . Bda01g00879 . . . . . Cmo05g00514 . . . . . Sed04g0134 . . Bhi04g00748 Tan02g2378 Cmetu03g2140 . Hepe10g0513 . Lcy13g1576 Cla08g01098 Cam08g1552 Cec08g1125 Cco08g1252 Clacu08g1254 . Cre08g1036 . . Cone17ag1228 Cone20ag0499 . . . Cme03g01512 Blo17g00124 Blo18g00136 . Bda13g01408 Bpe02g01116 Bpe14g00448 . Bma02g00147 . . . . Cma05g00491 Car05g00440 . Cpe11g00430 . . . . . . . . . . . . . . . Lsi08g00955 . Chy03g01021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000449 7 3 6 4 6 3 3 3 3 3 3 3 3 3 3 3 3 4 3 3 3 3 3 3 3 4 3 10 12 1 117