Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1262 ATGACAAAGTGTTTCTTCTTCAGTATTACAGAGACCAAGAATTGGTGTCATCGTTATGGTTTCATCAAATCCGGCCTCCGATCCACCATTACAGATCTCAAAGACGGCACCACAGTTCATTGTTGGGTCCCCAAAAACCCAATTCACACCAAACCCAATCTCCTTCTAATCCATGGCATTGGAGCTAATGCACTTTGGCAATGGGGGGATTTCATTCCTGCTCTCGTACCTCATTTCAATCTCTACATCCCTGATTTGATCTTCTTTGGCGACTCGTTCACAACTCGCCCAGAGAGAACAGAGTGGTTTCAAGCTCAGTGTTTAATCCGAGTTATGGAGGCTAACTCAGTGGAGAAGTTCAGTTTGGTGGGGCTTAGCTATGGAGGATTTGTTGGGTACAGCCTCGCGGCGCTACGGCCGGAAATGGTGGAGAAAGTGGTGATTTGTTGCTCTGGGGTTTGTGTGGAAGAGAAGGATTTTAAAGATGGGTTGTTGAAAGTTTCTGATTTGGAGGAAGCTACAGCCATTTTGGTGCCTCAAAAGCCAGAGAAGCTCAAACAGTTGGTGGGTTACTCGTTTTTCCGGCCGCCCCCGATGCGGTTGATGCCTTCTTGTTTGCTCAATGATTTCATTGAGTCAATGTGTTTGGACCATATTGAAGAAAAGAGAGATCTGATTCGAACTATTCCCAGAGGGAGAAAGCTTTCAGATCTTCCCAAGATTCGCCAGCGGACAATGATACTCTGGGGAGAACATGATCAAGTATTTCCTGTAGAATTGGGTCACAGATTGAAACGGCATTTGGGGGACAATGCTACACTTGTGGTAATCAAGAATGCAGGCCATGCCTTCAACTCAGAGGAGCCAAAGGAATTTCTCAACCATTTGATTTCTTTCCTGGTTGATTCATAG 912 45.5 MTKCFFFSITETKNWCHRYGFIKSGLRSTITDLKDGTTVHCWVPKNPIHTKPNLLLIHGIGANALWQWGDFIPALVPHFNLYIPDLIFFGDSFTTRPERTEWFQAQCLIRVMEANSVEKFSLVGLSYGGFVGYSLAALRPEMVEKVVICCSGVCVEEKDFKDGLLKVSDLEEATAILVPQKPEKLKQLVGYSFFRPPPMRLMPSCLLNDFIESMCLDHIEEKRDLIRTIPRGRKLSDLPKIRQRTMILWGEHDQVFPVELGHRLKRHLGDNATLVVIKNAGHAFNSEEPKEFLNHLISFLVDS 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24431492 24433160 + CcPI632755_08g012620.1 Cco08g1262 185736

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1262 303 PRINTS Epoxide hydrolase signature 277 299 IPR000639 GO:0003824(InterPro)
Cco08g1262 303 PRINTS Epoxide hydrolase signature 136 149 IPR000639 GO:0003824(InterPro)
Cco08g1262 303 PRINTS Epoxide hydrolase signature 122 135 IPR000639 GO:0003824(InterPro)
Cco08g1262 303 PRINTS Epoxide hydrolase signature 78 93 IPR000639 GO:0003824(InterPro)
Cco08g1262 303 PRINTS Alpha/beta hydrolase fold signature 136 149 IPR000073 -
Cco08g1262 303 PRINTS Alpha/beta hydrolase fold signature 78 93 IPR000073 -
Cco08g1262 303 PRINTS Alpha/beta hydrolase fold signature 122 135 IPR000073 -
Cco08g1262 303 PRINTS Alpha/beta hydrolase fold signature 245 259 IPR000073 -
Cco08g1262 303 Gene3D alpha/beta hydrolase 21 302 IPR029058 -
Cco08g1262 303 Pfam alpha/beta hydrolase fold 52 164 IPR000073 -
Cco08g1262 303 PANTHER SI:DKEY-122A22.2 7 300 IPR052370 -
Cco08g1262 303 SUPERFAMILY alpha/beta-Hydrolases 28 300 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1262 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1801 Cco-Chr7:32139697 Cco08g1262 Cco-Chr8:24431492 4.70E-101 dispersed
Cco08g1131 Cco-Chr8:23119246 Cco08g1262 Cco-Chr8:24431492 1.50E-56 dispersed
Cco08g1262 Cco-Chr8:24431492 Cco08g1192 Cco-Chr8:23660503 3.20E-06 dispersed
Cco07g1485 Cco-Chr7:28996016 Cco08g1262 Cco-Chr8:24431492 3.00E-11 transposed
Cco11g1461 Cco-Chr11:27421448 Cco08g1262 Cco-Chr8:24431492 1.90E-48 wgd
Cco04g1631 Cco-Chr4:31618290 Cco08g1262 Cco-Chr8:24431492 1.30E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g411 . . . . . . . . Cmo05g00523 . . . . . Sed04g0141 . . Bhi04g00761 Tan02g2392 Cmetu03g0357 . Hepe10g0498 . Lcy13g1562 Cla08g01109 Cam08g1562 Cec08g1136 Cco08g1262 Clacu08g1266 . Cre08g1046 Cone4ag1334 . . . Lsi04g02234 . . Cme03g01864 Blo17g00119 Blo18g00257 . Bda13g01402 . Bpe14g00453 . Bma02g00142 . . . . Cma05g00500 . . Cpe11g00437 . Bhi09g02434 . . . . Mch11g0665 . Cla11g01381 . Cec11g1465 Cco11g1461 Clacu11g1596 Cmu11g1415 Cre11g1835 Lsi08g00965 Csa02g02150 Chy03g01368 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010572 1 2 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 32