Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1276 ATGGCTGCCGCCCCTTCTGTTCGCGAGGAGAATGTTTACATGGCCAAGCTTGCCGAGCAGGCCGAGCGCTACGAGGAGATGGTCGAGTTCATGGAGAAGGTTTCCGCTTCCCTCGACAAGGAGGAGCTCACCGTCGAGGAGAGAAACCTCCTTTCTGTCGCCTACAAGAACGTCATCGGCGCTCGCAGGGCTTCCTGGCGTATCATTTCCTCCATCGAACAAAAGGAGGAGAGCCGAGGCAACGACGACCATGTCTCTGTGATCCGTGACTATAGATCCAAAATTGAGACCGAACTCTCCAATATTTGCGATGGAATCCTCAAGCTTCTCGATTCCAGACTCATTCCCTCCGCCGCTTCCGGAGATTCCAAGGTTTTTTACCTCAAAATGAAGGGAGATTACCATAGATACCTCGCCGAATTCAAAACCGGAGCCGAACGCAAGGAAGCTGCTGAAAGCACTCTCACTGCTTACAAAGCCGCTCAGGATATTGCAAATGCTGAGTTGCCTCCTACACATCCGATCCGACTTGGATTGGCCCTTAACTTCTCTGTATTCTACTATGAAATTTTGAATTCACCTGATCGTGCCTGCAGTCTTGCAAAACAGGCGTTTGATGAAGCTATCGCTGAATTGGATACCCTTGGCGAGGAATCCTACAAAGATAGTACTTTGATCATGCAGCTTCTTCGCGATAATCTCACTCTCTGGACATCGGACATGCAGGATGATGGTGCTGATGAGATTAAAGAAGCTCCCCCGAAGCGTGAGGATGAAAAGCAGTGA 786 50.0 MAAAPSVREENVYMAKLAEQAERYEEMVEFMEKVSASLDKEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNDDHVSVIRDYRSKIETELSNICDGILKLLDSRLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIANAELPPTHPIRLGLALNFSVFYYEILNSPDRACSLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKEAPPKREDEKQ 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24564769 24566394 + CcPI632755_08g012760.1 Cco08g1276 185750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1276 261 FunFam 14-3-3 protein epsilon 4 251 - -
Cco08g1276 261 Gene3D - 2 251 IPR036815 -
Cco08g1276 261 MobiDBLite consensus disorder prediction 243 261 - -
Cco08g1276 261 SUPERFAMILY 14-3-3 protein 8 240 IPR036815 -
Cco08g1276 261 Coils Coil 14 41 - -
Cco08g1276 261 SMART 1433_4 8 251 IPR023410 -
Cco08g1276 261 PANTHER 14-3-3 PROTEIN 8 243 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Cco08g1276 261 MobiDBLite consensus disorder prediction 242 261 - -
Cco08g1276 261 PIRSF 14-3-3 2 250 IPR000308 -
Cco08g1276 261 ProSitePatterns 14-3-3 proteins signature 1. 48 58 IPR023409 -
Cco08g1276 261 Pfam 14-3-3 protein 14 238 IPR023410 -
Cco08g1276 261 ProSitePatterns 14-3-3 proteins signature 2. 220 239 IPR023409 -
Cco08g1276 261 PRINTS 14-3-3 protein zeta signature 211 240 IPR000308 -
Cco08g1276 261 PRINTS 14-3-3 protein zeta signature 42 71 IPR000308 -
Cco08g1276 261 PRINTS 14-3-3 protein zeta signature 122 144 IPR000308 -
Cco08g1276 261 PRINTS 14-3-3 protein zeta signature 157 183 IPR000308 -
Cco08g1276 261 PRINTS 14-3-3 protein zeta signature 184 210 IPR000308 -
Cco08g1276 261 PRINTS 14-3-3 protein zeta signature 91 115 IPR000308 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1263 Cco-Chr8:24433952 Cco08g1276 Cco-Chr8:24564769 4.60E-91 dispersed
Cco08g1276 Cco-Chr8:24564769 Cco11g1495 Cco-Chr11:27783990 1.00E-101 dispersed
Cco07g1702 Cco-Chr7:31024817 Cco08g1276 Cco-Chr8:24564769 4.00E-120 transposed
Cco11g1473 Cco-Chr11:27549261 Cco08g1276 Cco-Chr8:24564769 4.00E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1276 K06630 - csv:101220164 508.834