Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1279 ATGAACAACGGCTCCAAATCCCCATCGCCAACCCTATATGTTTCAAGCTTTTCGGAGTATACAGTTGTTGATGTCCATAACCTTGTTCCAATCAATCCGGAGCTTCCTATGGATAAGGCCACCTTGTTTGGCTGTGGGGTCCCCACTGGGATTGGAGCTGCGTGGAAGGTTGCTGACGTGGACGAGGGTTCCACTGTGGCTATCTTCGGCCTTGGTATTGTTGGACTCTCGGTAGCGGAAGGATCAAAACGCCGTAAAGCTTCAAAGATCATCGGCATTGATTTGAATCCTAAAAAATTTGAGATTGCAAAAAAGTTTGGGGTGACTGATTTTATCAATCCAGCTACTTGTGGAGATAAGCCAATTCATGAAGTTATTAAGGAACAAACTGCTGGGGGAGCAGACTACTGCTTTGAGTGCATTGGCTTGGCTTCCCTCATGGAAGAAGCTATCAAAAGCACTAGAGAGGGTTGGGGAAAGACGGTGATTTTGGGAGTAGAGAAAGATGGTGCGGCATTCAAAGTGAAGTCCTTTGATATAATAAATGGGATCACCATCACCGGCGCTCTTTTTGGAGGTCTTAAGCCAAAATCAGACGTTCCAATGCTTATCAACAAGTTTTTGGACAAACCCATTCCTTATTCCACTCGGCCCATAAAAGCCCATTACCCAAACGAAGGATTGACGTGGCAAATTATAATTGGAGATCAACTTTCGCTCTTTCGCTTCGGCTGGAATCATCGGAACCACCGATCGCTTCTTCTTCTTCCATCCATGGCGGAAGCCCAGAGCGAAAAAACCCCTTCCTTAGCTGAGCAATATGCCTTGAAAGAAAATGAGAAGGTGGATATACCAAAGCCCTCTGAAGTAAAAGAGGTGGAGAACCCTGAAAATGCTGCTCCTGCTGAAGTTGTTGTGAAGAATGATGAACCACCTGTTGAAGCTGATGCTGATCAAGGGAGTGACAATTCTCCTGCTCAAGAAAACAATGGAGATGCTCCAGCAGCTGCTGCTGTAGAGGACGTTGAAACCAGTCCTGCTGCTGAAAATGACAGTGGAGCTGCTGATGAAAGTAGTGGAGCTGGAGAAGAGGAAAATTCTGGGGATCAAGAAAGCACCGATGAGCAACCTGAGATTAAGCTCGAAACAGCACCAGTAGATTTCCGTTTCCCTACTACAAATCAAACTAGGCATTGCTTCACCCGCTACATTGAGTACCACAGATGCATACAAGCGAAAGGGGAAGGTGCTCCGGAGTGCAACAAGTTTGCGAAATATTATCGTTCTCTTTGCCCAAGTGAATGGGTAGAGAAGTGGAACGAGCAGAGGGAGAATGGAACCTTCCCGGGTCCGCTATCTTGTTTCATCAAATTACATGGAGCTAGAACCACTCCTGTAAGACCGCCATCTTATATGTGCACTGATTGA 1428 46.15 MNNGSKSPSPTLYVSSFSEYTVVDVHNLVPINPELPMDKATLFGCGVPTGIGAAWKVADVDEGSTVAIFGLGIVGLSVAEGSKRRKASKIIGIDLNPKKFEIAKKFGVTDFINPATCGDKPIHEVIKEQTAGGADYCFECIGLASLMEEAIKSTREGWGKTVILGVEKDGAAFKVKSFDIINGITITGALFGGLKPKSDVPMLINKFLDKPIPYSTRPIKAHYPNEGLTWQIIIGDQLSLFRFGWNHRNHRSLLLLPSMAEAQSEKTPSLAEQYALKENEKVDIPKPSEVKEVENPENAAPAEVVVKNDEPPVEADADQGSDNSPAQENNGDAPAAAAVEDVETSPAAENDSGAADESSGAGEEENSGDQESTDEQPEIKLETAPVDFRFPTTNQTRHCFTRYIEYHRCIQAKGEGAPECNKFAKYYRSLCPSEWVEKWNEQRENGTFPGPLSCFIKLHGARTTPVRPPSYMCTD 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24578713 24585539 + CcPI632755_08g012790.1 Cco08g1279 185753

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1279 475 PANTHER ALCOHOL DEHYDROGENASE 11 212 - GO:0004024(PANTHER)|GO:0005829(PANTHER)|GO:0008270(PANTHER)|GO:0046294(PANTHER)|GO:0051903(PANTHER)
Cco08g1279 475 MobiDBLite consensus disorder prediction 278 293 - -
Cco08g1279 475 FunFam S-(hydroxymethyl)glutathione dehydrogenase 50 189 - -
Cco08g1279 475 MobiDBLite consensus disorder prediction 278 386 - -
Cco08g1279 475 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 208 IPR036291 -
Cco08g1279 475 Gene3D - 12 215 - -
Cco08g1279 475 FunFam Cytochrome c oxidase subunit 6B1 373 452 - -
Cco08g1279 475 CDD Cyt_c_Oxidase_VIb 377 451 - -
Cco08g1279 475 Pfam Zinc-binding dehydrogenase 74 204 IPR013149 -
Cco08g1279 475 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 396 439 - -
Cco08g1279 475 Gene3D - 50 189 - -
Cco08g1279 475 Gene3D Cytochrome c oxidase, subunit VIb 374 454 IPR036549 GO:0005739(InterPro)
Cco08g1279 475 SUPERFAMILY Cytochrome c oxidase subunit h 378 451 IPR036549 GO:0005739(InterPro)
Cco08g1279 475 Pfam Cytochrome oxidase c subunit VIb 389 449 IPR048280 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1279 K00121 - - csv:101209737 371.703
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1279 Cco-Chr8:24578713 Cco09g0975 Cco-Chr9:9249689 1.20E-47 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g444 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01126 Cam08g1582 Cec08g1152 Cco08g1279 Clacu08g1283 . Cre08g1065 . . . . . . . Cme03g01849 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi08g00983 Csa02g02165 Chy03g01352 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000997 1 5 1 1 0 2 3 2 2 4 2 3 4 4 4 4 3 1 4 3 3 4 3 5 1 4 2 2 4 3 84