Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1286 ATGGCGGTTTCAATTAGCAGAAAACTTTTCCCTGTTGCCACGGGAACTACCCAACTCAACACCAATTGTTCCAGCTGCCCTTACGACTGCCCTTTCGACTGCTACGGTATTCCAGATTTCTACTTCCCACCGCCGCCTCTGCCGCCGCCTCGTCTCTCCGACCACCAAAAACAGCTTCCAGTTATGACCATCGTCCTAATTCTGTTCGTCGCCTTTTTCTTCGCTTTTAGTTTCTACATCATCGTTGTAAAATGCCGATCTTGGCTCACTCGCTCCCGCAACCAAGGGGCAGAGGTGTTGCAATCGGACGTCGGAGAGGGAGAGTTTATGAACGAGAATCAAATCGATCATCCAATTTGGTTCATCACCACCGTTGGGCTTCAGCAATCAGTCATCAATTCGATTACGGTTTGCAAGTACAAGAAGGGCGAAGGTTTAATCGAAGGAACAGATTGCTCTGTTTGTTTGAGTGAATTTCAAGAAGACGAAATGCTTCGGCTATTACCCAAATGCAGCCACGCGTTTCATATTGGTTGTGTTGATACTTGGCTAAGAACTCACACCACTTGCCCTCTCTGTCGAGCTCATATTCTAACTGATTTAGGTCCTGCGAATCAAAACGAAGCTAATTTGAGTGTAAATGAAGAAACCCAGATGGAGAATGAAGAGATTAACGGCCAAGTTTTAGTGGAAAATGAGGGGGTTGTTTCTAGTGGGAGCTCTGAAAACAGAGGAGATGTTGTTGATGAACAGAGAGAAGTTGGGGATGTTCAGATTGAGGAGACAATTCCAAAAGAAGGGAATAATTTTGAATCTGATGATTCTAAAGTTGAAGGAAATGAAAGTATGAGGAACAATGAGATGGATTCTTCTTCAACAACATGA 885 44.41 MAVSISRKLFPVATGTTQLNTNCSSCPYDCPFDCYGIPDFYFPPPPLPPPRLSDHQKQLPVMTIVLILFVAFFFAFSFYIIVVKCRSWLTRSRNQGAEVLQSDVGEGEFMNENQIDHPIWFITTVGLQQSVINSITVCKYKKGEGLIEGTDCSVCLSEFQEDEMLRLLPKCSHAFHIGCVDTWLRTHTTCPLCRAHILTDLGPANQNEANLSVNEETQMENEEINGQVLVENEGVVSSGSSENRGDVVDEQREVGDVQIEETIPKEGNNFESDDSKVEGNESMRNNEMDSSSTT 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24634433 24635317 + CcPI632755_08g012860.1 Cco08g1286 185760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1286 294 SMART ring_2 152 193 IPR001841 -
Cco08g1286 294 MobiDBLite consensus disorder prediction 236 294 - -
Cco08g1286 294 SUPERFAMILY RING/U-box 145 205 - -
Cco08g1286 294 CDD RING-H2_EL5-like 151 194 - -
Cco08g1286 294 FunFam RING-H2 finger protein ATL54 127 200 - -
Cco08g1286 294 MobiDBLite consensus disorder prediction 245 283 - -
Cco08g1286 294 Pfam Ring finger domain 151 194 IPR001841 -
Cco08g1286 294 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 200 IPR013083 -
Cco08g1286 294 ProSiteProfiles Zinc finger RING-type profile. 152 194 IPR001841 -
Cco08g1286 294 PANTHER RING-H2 FINGER PROTEIN ATL16 43 284 IPR044600 GO:0016567(InterPro)|GO:0016740(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1286 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1286 Cco-Chr8:24634433 Cco11g1306 Cco-Chr11:25687463 2.20E-20 dispersed
Cco08g1286 Cco-Chr8:24634433 Cco08g1288 Cco-Chr8:24672942 2.00E-16 proximal
Cco02g0331 Cco-Chr2:3011299 Cco08g1286 Cco-Chr8:24634433 8.00E-11 transposed
Cco04g1618 Cco-Chr4:31481576 Cco08g1286 Cco-Chr8:24634433 1.10E-33 transposed
Cco05g0348 Cco-Chr5:2838524 Cco08g1286 Cco-Chr8:24634433 9.20E-35 transposed
Cco06g0887 Cco-Chr6:11059183 Cco08g1286 Cco-Chr8:24634433 3.90E-27 transposed
Cco09g1187 Cco-Chr9:11805039 Cco08g1286 Cco-Chr8:24634433 2.10E-39 transposed
Cco09g1775 Cco-Chr9:30362491 Cco08g1286 Cco-Chr8:24634433 7.50E-39 transposed
Cco11g1487 Cco-Chr11:27697706 Cco08g1286 Cco-Chr8:24634433 1.00E-14 wgd
Cco04g1615 Cco-Chr4:31463614 Cco08g1286 Cco-Chr8:24634433 8.00E-14 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g458 . . . . Bpe02g00128 . . Bma01g02598 Cmo05g00542 . . . . . Sed04g0166 . . Bhi04g00790 Tan02g2426 Cmetu03g0381 . Hepe10g0470 . Lcy13g1534 Cla08g01133 Cam08g1590 Cec08g1160 Cco08g1286 Clacu08g1290 . Cre08g1072 Cone6ag1544 Cone9ag1461 . . . . . . . . Bda11g00783 . . . . . . . . . . Car05g00465 . Cpe11g00454 . . . . . . . . . . . . . . . Lsi08g00989 Csa02g02174 Chy03g01343 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011623 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29