Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1287 ATGATGGCATTGGAAACTGTGGTTTACCCACAAGATACATTTAGTTATGTTTGCAGGGATTTCTGTTCTTACGGAGGAGGAACTTGGGGTACCTACGACTATGGCTTCCAATTAGAAGAACAAAAAGCCTTCCTTGGTGTCATTGAAAACCAAACAGAGGACCAAAAATTCACCGCTAATTGGGAAGCTTCACCGGAGGAATGCTCAATTAATCAGCCACTCCCCGGTGGACCTATCTACCCGCCGGTGGAAGTAGAACCCACACCACCCCCTCCACCACAACCAACTACCGGAAGAAGAAAACGACGGCGGACCCGGAGCACAAAAAACAAAGAAGAAATTGAAAACCAGAGGATGACTCACATCGCAGTGGAACGTAATCGCCGGAAACAAATGAATGAGTATCTTGCCGTTCTCCGATCATTAATGCCGTCTTCCTACGTTCAAAGGGGAGACCAAGCTTCCATTATTGGTGGTGCCATTAACTTTGTCAAGGAATTAGAACAACAATTGCAATTCATTAAAGTCCATAAAGAACAAACTGGCACTTCCCCTTTTGCCGACTTCTTTTCCTTCCCTCAATACTCAACTCGTGCCACAACTCAGTCCAAGAACAACAACAACTCGCCCCATGACTCGTCCATTGCTCACACCCAATGGCCCGCCGGAGACATTGAAGTCACCATGGTCGACACTCATGCGAACCTTAAAATACTGTCCCAAAAACGCCCAAGACAGCTCCTTAAAATGGTCGCTGGATTTCAAAGCTTGAGACTTACAATTCTTCATCTCAATGTTACCACTTCAGATCAAATGGTTCTTTATTCTCTAAGTATCAAGGTTGAAGAAGGATGTCAGTTGAATACGGTGGATGAAATTGCTGCAGCTGTGAATCAAATTCTACTCTCTATTCAAGAGGAAGCTGTCTTCAGTTGA 936 44.76 MMALETVVYPQDTFSYVCRDFCSYGGGTWGTYDYGFQLEEQKAFLGVIENQTEDQKFTANWEASPEECSINQPLPGGPIYPPVEVEPTPPPPPQPTTGRRKRRRTRSTKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQQLQFIKVHKEQTGTSPFADFFSFPQYSTRATTQSKNNNNSPHDSSIAHTQWPAGDIEVTMVDTHANLKILSQKRPRQLLKMVAGFQSLRLTILHLNVTTSDQMVLYSLSIKVEEGCQLNTVDEIAAAVNQILLSIQEEAVFS 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24643432 24644790 - CcPI632755_08g012870.1 Cco08g1287 185761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1287 311 MobiDBLite consensus disorder prediction 75 96 - -
Cco08g1287 311 Gene3D - 110 180 IPR036638 GO:0046983(InterPro)
Cco08g1287 311 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 184 IPR036638 GO:0046983(InterPro)
Cco08g1287 311 SMART finulus 122 173 IPR011598 GO:0046983(InterPro)
Cco08g1287 311 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983(InterPro)
Cco08g1287 311 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983(InterPro)
Cco08g1287 311 MobiDBLite consensus disorder prediction 63 113 - -
Cco08g1287 311 PANTHER MAX DIMERIZATION, MAD 4 301 - GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1287 Cco-Chr8:24643432 Cco02g0443 Cco-Chr2:3993208 6.70E-07 dispersed
Cco02g1721 Cco-Chr2:29936814 Cco08g1287 Cco-Chr8:24643432 1.00E-58 transposed
Cco03g1743 Cco-Chr3:32131551 Cco08g1287 Cco-Chr8:24643432 3.10E-47 transposed
Cco05g0004 Cco-Chr5:50100 Cco08g1287 Cco-Chr8:24643432 7.40E-40 transposed
Cco05g0386 Cco-Chr5:3149754 Cco08g1287 Cco-Chr8:24643432 4.60E-38 transposed
Cco05g0638 Cco-Chr5:5194208 Cco08g1287 Cco-Chr8:24643432 3.20E-28 transposed
Cco05g1037 Cco-Chr5:9146598 Cco08g1287 Cco-Chr8:24643432 2.40E-19 transposed
Cco09g1188 Cco-Chr9:11808089 Cco08g1287 Cco-Chr8:24643432 1.30E-47 transposed
Cco04g1564 Cco-Chr4:31016318 Cco08g1287 Cco-Chr8:24643432 6.10E-07 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59799 PF00010 HLH 4.30E-10 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1287 - - - 0.0